Packages

Package	Description
ca.corefacility.bioinformatics.irida
ca.corefacility.bioinformatics.irida.config.analysis
ca.corefacility.bioinformatics.irida.config.data
ca.corefacility.bioinformatics.irida.config.environment
ca.corefacility.bioinformatics.irida.config.repository
ca.corefacility.bioinformatics.irida.config.security
ca.corefacility.bioinformatics.irida.config.services
ca.corefacility.bioinformatics.irida.config.services.scheduled
ca.corefacility.bioinformatics.irida.config.web
ca.corefacility.bioinformatics.irida.config.workflow
ca.corefacility.bioinformatics.irida.constraints
ca.corefacility.bioinformatics.irida.constraints.impl
ca.corefacility.bioinformatics.irida.database.changesets
ca.corefacility.bioinformatics.irida.events
ca.corefacility.bioinformatics.irida.events.annotations
ca.corefacility.bioinformatics.irida.exceptions
ca.corefacility.bioinformatics.irida.exceptions.galaxy
ca.corefacility.bioinformatics.irida.exceptions.pipelines
ca.corefacility.bioinformatics.irida.jackson2.mixin
ca.corefacility.bioinformatics.irida.model
ca.corefacility.bioinformatics.irida.model.announcements
ca.corefacility.bioinformatics.irida.model.assembly
ca.corefacility.bioinformatics.irida.model.enums
ca.corefacility.bioinformatics.irida.model.event
ca.corefacility.bioinformatics.irida.model.export
ca.corefacility.bioinformatics.irida.model.irida
ca.corefacility.bioinformatics.irida.model.joins
ca.corefacility.bioinformatics.irida.model.joins.impl
ca.corefacility.bioinformatics.irida.model.project
ca.corefacility.bioinformatics.irida.model.remote
ca.corefacility.bioinformatics.irida.model.remote.resource
ca.corefacility.bioinformatics.irida.model.run
ca.corefacility.bioinformatics.irida.model.sample
ca.corefacility.bioinformatics.irida.model.sample.metadata
ca.corefacility.bioinformatics.irida.model.sequenceFile
ca.corefacility.bioinformatics.irida.model.subscription
ca.corefacility.bioinformatics.irida.model.upload
ca.corefacility.bioinformatics.irida.model.upload.galaxy
ca.corefacility.bioinformatics.irida.model.user
ca.corefacility.bioinformatics.irida.model.user.group
ca.corefacility.bioinformatics.irida.model.workflow
ca.corefacility.bioinformatics.irida.model.workflow.analysis
ca.corefacility.bioinformatics.irida.model.workflow.analysis.type
ca.corefacility.bioinformatics.irida.model.workflow.analysis.type.config
ca.corefacility.bioinformatics.irida.model.workflow.config
ca.corefacility.bioinformatics.irida.model.workflow.description
ca.corefacility.bioinformatics.irida.model.workflow.execution
ca.corefacility.bioinformatics.irida.model.workflow.execution.galaxy
ca.corefacility.bioinformatics.irida.model.workflow.manager
ca.corefacility.bioinformatics.irida.model.workflow.manager.galaxy
ca.corefacility.bioinformatics.irida.model.workflow.structure
ca.corefacility.bioinformatics.irida.model.workflow.submission
ca.corefacility.bioinformatics.irida.oauth2
ca.corefacility.bioinformatics.irida.pipeline.results
ca.corefacility.bioinformatics.irida.pipeline.results.impl
ca.corefacility.bioinformatics.irida.pipeline.results.updater
ca.corefacility.bioinformatics.irida.pipeline.results.updater.impl
ca.corefacility.bioinformatics.irida.pipeline.upload
ca.corefacility.bioinformatics.irida.pipeline.upload.galaxy
ca.corefacility.bioinformatics.irida.plugins
ca.corefacility.bioinformatics.irida.processing
ca.corefacility.bioinformatics.irida.processing.concatenate
ca.corefacility.bioinformatics.irida.processing.concatenate.impl
ca.corefacility.bioinformatics.irida.processing.impl
ca.corefacility.bioinformatics.irida.repositories
ca.corefacility.bioinformatics.irida.repositories.analysis
ca.corefacility.bioinformatics.irida.repositories.analysis.submission
ca.corefacility.bioinformatics.irida.repositories.assembly
ca.corefacility.bioinformatics.irida.repositories.filesystem
ca.corefacility.bioinformatics.irida.repositories.joins.announcement
ca.corefacility.bioinformatics.irida.repositories.joins.project
ca.corefacility.bioinformatics.irida.repositories.joins.sample
ca.corefacility.bioinformatics.irida.repositories.referencefile
ca.corefacility.bioinformatics.irida.repositories.relational.auditing
ca.corefacility.bioinformatics.irida.repositories.remote
ca.corefacility.bioinformatics.irida.repositories.remote.impl
ca.corefacility.bioinformatics.irida.repositories.remote.resttemplate
ca.corefacility.bioinformatics.irida.repositories.sample
ca.corefacility.bioinformatics.irida.repositories.sequencefile
ca.corefacility.bioinformatics.irida.repositories.specification
ca.corefacility.bioinformatics.irida.repositories.user
ca.corefacility.bioinformatics.irida.ria.config
ca.corefacility.bioinformatics.irida.ria.config.filters
ca.corefacility.bioinformatics.irida.ria.config.thymeleaf.webpacker
ca.corefacility.bioinformatics.irida.ria.config.thymeleaf.webpacker.processor
ca.corefacility.bioinformatics.irida.ria.config.thymeleaf.webpacker.util
ca.corefacility.bioinformatics.irida.ria.security
ca.corefacility.bioinformatics.irida.ria.utilities
ca.corefacility.bioinformatics.irida.ria.utilities.components
ca.corefacility.bioinformatics.irida.ria.utilities.converters
ca.corefacility.bioinformatics.irida.ria.web
ca.corefacility.bioinformatics.irida.ria.web.activities
ca.corefacility.bioinformatics.irida.ria.web.activities.dto
ca.corefacility.bioinformatics.irida.ria.web.admin
ca.corefacility.bioinformatics.irida.ria.web.admin.dto.statistics
ca.corefacility.bioinformatics.irida.ria.web.ajax
ca.corefacility.bioinformatics.irida.ria.web.ajax.dto
ca.corefacility.bioinformatics.irida.ria.web.ajax.dto.ajax
ca.corefacility.bioinformatics.irida.ria.web.ajax.dto.cart
ca.corefacility.bioinformatics.irida.ria.web.ajax.dto.clients
ca.corefacility.bioinformatics.irida.ria.web.ajax.dto.pipeline
ca.corefacility.bioinformatics.irida.ria.web.ajax.dto.references
ca.corefacility.bioinformatics.irida.ria.web.ajax.dto.remote
ca.corefacility.bioinformatics.irida.ria.web.ajax.dto.ui
ca.corefacility.bioinformatics.irida.ria.web.ajax.metadata
ca.corefacility.bioinformatics.irida.ria.web.ajax.metadata.dto
ca.corefacility.bioinformatics.irida.ria.web.ajax.ontologies
ca.corefacility.bioinformatics.irida.ria.web.ajax.projects
ca.corefacility.bioinformatics.irida.ria.web.ajax.projects.dto
ca.corefacility.bioinformatics.irida.ria.web.ajax.projects.settings
ca.corefacility.bioinformatics.irida.ria.web.ajax.projects.settings.dto
ca.corefacility.bioinformatics.irida.ria.web.ajax.projects.settings.exceptions
ca.corefacility.bioinformatics.irida.ria.web.ajax.users
ca.corefacility.bioinformatics.irida.ria.web.analyses
ca.corefacility.bioinformatics.irida.ria.web.analysis
ca.corefacility.bioinformatics.irida.ria.web.analysis.auditing
ca.corefacility.bioinformatics.irida.ria.web.analysis.dto
ca.corefacility.bioinformatics.irida.ria.web.announcements
ca.corefacility.bioinformatics.irida.ria.web.announcements.dto
ca.corefacility.bioinformatics.irida.ria.web.cart
ca.corefacility.bioinformatics.irida.ria.web.cart.dto
ca.corefacility.bioinformatics.irida.ria.web.components
ca.corefacility.bioinformatics.irida.ria.web.components.agGrid
ca.corefacility.bioinformatics.irida.ria.web.components.ant.notification
ca.corefacility.bioinformatics.irida.ria.web.components.ant.table
ca.corefacility.bioinformatics.irida.ria.web.components.datatables
ca.corefacility.bioinformatics.irida.ria.web.components.datatables.config
ca.corefacility.bioinformatics.irida.ria.web.components.datatables.export
ca.corefacility.bioinformatics.irida.ria.web.components.datatables.models
ca.corefacility.bioinformatics.irida.ria.web.dto
ca.corefacility.bioinformatics.irida.ria.web.dto.list
ca.corefacility.bioinformatics.irida.ria.web.errors
ca.corefacility.bioinformatics.irida.ria.web.exceptions
ca.corefacility.bioinformatics.irida.ria.web.files
ca.corefacility.bioinformatics.irida.ria.web.files.dto
ca.corefacility.bioinformatics.irida.ria.web.launchPipeline
ca.corefacility.bioinformatics.irida.ria.web.launchPipeline.dtos
ca.corefacility.bioinformatics.irida.ria.web.linelist
ca.corefacility.bioinformatics.irida.ria.web.linelist.dto
ca.corefacility.bioinformatics.irida.ria.web.login
ca.corefacility.bioinformatics.irida.ria.web.models
ca.corefacility.bioinformatics.irida.ria.web.models.datatables
ca.corefacility.bioinformatics.irida.ria.web.models.export
ca.corefacility.bioinformatics.irida.ria.web.models.project
ca.corefacility.bioinformatics.irida.ria.web.models.sequenceFile
ca.corefacility.bioinformatics.irida.ria.web.models.tables
ca.corefacility.bioinformatics.irida.ria.web.models.user
ca.corefacility.bioinformatics.irida.ria.web.oauth
ca.corefacility.bioinformatics.irida.ria.web.pipelines
ca.corefacility.bioinformatics.irida.ria.web.pipelines.dto
ca.corefacility.bioinformatics.irida.ria.web.projects
ca.corefacility.bioinformatics.irida.ria.web.projects.dto
ca.corefacility.bioinformatics.irida.ria.web.projects.dto.samples
ca.corefacility.bioinformatics.irida.ria.web.projects.error
ca.corefacility.bioinformatics.irida.ria.web.projects.metadata
ca.corefacility.bioinformatics.irida.ria.web.projects.settings
ca.corefacility.bioinformatics.irida.ria.web.projects.settings.dto
ca.corefacility.bioinformatics.irida.ria.web.rempoteapi.dto
ca.corefacility.bioinformatics.irida.ria.web.samples
ca.corefacility.bioinformatics.irida.ria.web.samples.dto
ca.corefacility.bioinformatics.irida.ria.web.search
ca.corefacility.bioinformatics.irida.ria.web.sequencingRuns
ca.corefacility.bioinformatics.irida.ria.web.sequencingRuns.dto
ca.corefacility.bioinformatics.irida.ria.web.services
ca.corefacility.bioinformatics.irida.ria.web.sessionAttrs
ca.corefacility.bioinformatics.irida.ria.web.settings
ca.corefacility.bioinformatics.irida.ria.web.settings.dto
ca.corefacility.bioinformatics.irida.ria.web.users
ca.corefacility.bioinformatics.irida.ria.web.users.dto
ca.corefacility.bioinformatics.irida.ria.web.utilities
ca.corefacility.bioinformatics.irida.security
ca.corefacility.bioinformatics.irida.security.permissions
ca.corefacility.bioinformatics.irida.security.permissions.analysis
ca.corefacility.bioinformatics.irida.security.permissions.files
ca.corefacility.bioinformatics.irida.security.permissions.metadata
ca.corefacility.bioinformatics.irida.security.permissions.project
ca.corefacility.bioinformatics.irida.security.permissions.sample
ca.corefacility.bioinformatics.irida.security.permissions.user
ca.corefacility.bioinformatics.irida.service
ca.corefacility.bioinformatics.irida.service.analysis.annotations
ca.corefacility.bioinformatics.irida.service.analysis.execution
ca.corefacility.bioinformatics.irida.service.analysis.execution.galaxy
ca.corefacility.bioinformatics.irida.service.analysis.workspace
ca.corefacility.bioinformatics.irida.service.analysis.workspace.galaxy
ca.corefacility.bioinformatics.irida.service.export
ca.corefacility.bioinformatics.irida.service.impl
ca.corefacility.bioinformatics.irida.service.impl.analysis.submission
ca.corefacility.bioinformatics.irida.service.impl.export
ca.corefacility.bioinformatics.irida.service.impl.processor
ca.corefacility.bioinformatics.irida.service.impl.sample
ca.corefacility.bioinformatics.irida.service.impl.user
ca.corefacility.bioinformatics.irida.service.impl.workflow
ca.corefacility.bioinformatics.irida.service.remote
ca.corefacility.bioinformatics.irida.service.remote.impl
ca.corefacility.bioinformatics.irida.service.sample
ca.corefacility.bioinformatics.irida.service.user
ca.corefacility.bioinformatics.irida.service.util
ca.corefacility.bioinformatics.irida.service.util.impl
ca.corefacility.bioinformatics.irida.service.workflow
ca.corefacility.bioinformatics.irida.util
ca.corefacility.bioinformatics.irida.validators
ca.corefacility.bioinformatics.irida.validators.annotations
ca.corefacility.bioinformatics.irida.validators.annotations.validators
ca.corefacility.bioinformatics.irida.validators.groups
ca.corefacility.bioinformatics.irida.web.assembler.resource
ca.corefacility.bioinformatics.irida.web.assembler.resource.sample
ca.corefacility.bioinformatics.irida.web.assembler.resource.sequencefile
ca.corefacility.bioinformatics.irida.web.controller.api
ca.corefacility.bioinformatics.irida.web.controller.api.exception
ca.corefacility.bioinformatics.irida.web.controller.api.json
ca.corefacility.bioinformatics.irida.web.controller.api.projects
ca.corefacility.bioinformatics.irida.web.controller.api.samples
ca.corefacility.bioinformatics.irida.web.controller.api.sequencingrun
ca.corefacility.bioinformatics.irida.web.filter
ca.corefacility.bioinformatics.irida.web.spring.view