Filtering

Note that by default, gNALI filters for high-confidence loss-of-function variants. There is currently no way to disable this. Other filters are available through optional parameters.

Predefined Filters

gNALI defines a few filters natively. We can view them using the help command.

> gnali --help
...
-p [PREDEFINED_FILTERS [PREDEFINED_FILTERS ...]], --predefined_filters [PREDEFINED_FILTERS [PREDEFINED_FILTERS ...]]
                        Predefined filters. To use multiple, separate them by
                        spaces. Options: {'gnomadv2.1.1': {'homozygous-
                        controls': 'controls_nhomalt>0', 'heterozygous-
                        controls': 'controls_nhomalt=0', 'homozygous':
                        'nhomalt>0'}, 'gnomadv3.1.1': {'homozygous': 'nhomalt>0'}}
...

gnomADv2.1.1 Filters

We can see we have three predefined filters (and the filter expressions they use) for gnomADv2.1.1 available:

gnomADv3.1.1 Filters

We can see we have one predefined filters (and the filter expression it usse) for gnomADv3.1.1 available:

For example, if we were using gnomADv2.1.1 and wanted to filter for variants with a non-zero number of homozygous samples in the control group, we could use the following command:

gnali
    --input my_gnali_stuff/data/genes.txt
    --predefined_filters homozygous-controls
    --output my_results/

To use several predefined filters, separate them with spaces in your command.

An example execution using predefined filters can be found here.

Additional Filters

To filter based on an annotation, construct an expression of the form <annotation><operator><value>, where annotation appears in the below available filters or in the VCF header of your database, operator is one of !=/==/</>/<=/>=, and value is a value to compare to, subject to the value type (ex. integer, floating point, string, etc). Enclose them in quotes and separate by spaces if you're using several additional filters at once.

For example, if we were using gnomADv2.1.1 and wanted to filter for variants with an alternate allele count greater than 3, and total allele number greater than 10, we would find the following annotations below:

Annotation Value Type Description
AC Integer Alternate allele count for samples
AN Integer Total number of alleles in samples

... and add the expressions "AC>3" and "AN>10" to our command, like so:

gnali
    --input my_gnali_stuff/data/genes.txt
    --additional_filters "AC>3" "AN>10"
    --output my_results/

An example execution using additional filters can be found here.

Note that not all gnomAD annotations are supported as filters by gNALI.

gnomADv2.1.1 Filters

Annotation Value Type Description
AC Integer Alternate allele count for samples
AN Integer Total number of alleles in samples
AF Float Alternate allele frequency in samples
rf_tp_probability Float Random forest prediction probability for a site being a true variant
FS Float Phred-scaled p-value of Fisher's exact test for strand bias
InbreedingCoeff Float Inbreeding coefficient as estimated from the genotype likelihoods per-sample when compared against the Hardy-Weinberg expectation
MQ Float Root mean square of the mapping quality of reads across all samples
MQRankSum Float Z-score from Wilcoxon rank sum test of alternate vs. reference read mapping qualities
QD Float Variant call confidence normalized by depth of sample reads supporting a variant
ReadPosRankSum Float Z-score from Wilcoxon rank sum test of alternate vs. reference read position bias
SOR Float Strand bias estimated by the symmetric odds ratio test
BaseQRankSum Float Z-score from Wilcoxon rank sum test of alternate vs. reference base qualities
ClippingRankSum Float Z-score from Wilcoxon rank sum test of alternate vs. reference number of hard clipped bases
DP Integer Depth of informative coverage for each sample; reads with MQ=255 or with bad mates are filtered
VQSLOD Float Log-odds ratio of being a true variant versus being a false positive under the trained VQSR Gaussian mixture model
VQSR_culprit String Worst-performing annotation in the VQSR Gaussian mixture model
rf_label String Random forest training label
variant_type String Variant type (snv, indel, multi-snv, multi-indel, or mixed)
allele_type String Allele type (snv, indel, multi-snv, multi-indel, or mixed)
n_alt_alleles Integer Total number of alternate alleles observed at variant locus
pab_max Float Maximum p-value over callset for binomial test of observed allele balance for a heterozygous genotype
gq_hist_alt_bin_freq String Histogram for GQ in heterozygous individuals; bin edges are: 0
gq_hist_all_bin_freq String Histogram for GQ; bin edges are: 0
dp_hist_alt_bin_freq String Histogram for DP in heterozygous individuals; bin edges are: 0
dp_hist_alt_n_larger Integer Count of DP values falling above highest histogram bin edge
dp_hist_all_bin_freq String Histogram for DP; bin edges are: 0
dp_hist_all_n_larger Integer Count of DP values falling above highest histogram bin edge
ab_hist_alt_bin_freq String Histogram for AB in heterozygous individuals; bin edges are: 0.00
AC_nfe_seu Integer Alternate allele count for samples of Southern European ancestry
AN_nfe_seu Integer Total number of alleles in samples of Southern European ancestry
AF_nfe_seu Float Alternate allele frequency in samples of Southern European ancestry
nhomalt_nfe_seu Integer Count of homozygous individuals in samples of Southern European ancestry
controls_AC_afr_male Integer Alternate allele count for male samples of African-American/African ancestry in the controls subset
controls_AN_afr_male Integer Total number of alleles in male samples of African-American/African ancestry in the controls subset
controls_AF_afr_male Float Alternate allele frequency in male samples of African-American/African ancestry in the controls subset
controls_nhomalt_afr_male Integer Count of homozygous individuals in male samples of African-American/African ancestry in the controls subset
non_neuro_AC_eas_kor Integer Alternate allele count for samples of Korean ancestry in the non_neuro subset
non_neuro_AN_eas_kor Integer Total number of alleles in samples of Korean ancestry in the non_neuro subset
non_neuro_AF_eas_kor Float Alternate allele frequency in samples of Korean ancestry in the non_neuro subset
non_neuro_nhomalt_eas_kor Integer Count of homozygous individuals in samples of Korean ancestry in the non_neuro subset
non_topmed_AC_amr Integer Alternate allele count for samples of Latino ancestry in the non_topmed subset
non_topmed_AN_amr Integer Total number of alleles in samples of Latino ancestry in the non_topmed subset
non_topmed_AF_amr Float Alternate allele frequency in samples of Latino ancestry in the non_topmed subset
non_topmed_nhomalt_amr Integer Count of homozygous individuals in samples of Latino ancestry in the non_topmed subset
non_cancer_AC_asj_female Integer Alternate allele count for female samples of Ashkenazi Jewish ancestry in the non_cancer subset
non_cancer_AN_asj_female Integer Total number of alleles in female samples of Ashkenazi Jewish ancestry in the non_cancer subset
non_cancer_AF_asj_female Float Alternate allele frequency in female samples of Ashkenazi Jewish ancestry in the non_cancer subset
non_cancer_nhomalt_asj_female Integer Count of homozygous individuals in female samples of Ashkenazi Jewish ancestry in the non_cancer subset
AC_raw Integer Alternate allele count for samples
AN_raw Integer Total number of alleles in samples
AF_raw Float Alternate allele frequency in samples
nhomalt_raw Integer Count of homozygous individuals in samples
AC_fin_female Integer Alternate allele count for female samples of Finnish ancestry
AN_fin_female Integer Total number of alleles in female samples of Finnish ancestry
AF_fin_female Float Alternate allele frequency in female samples of Finnish ancestry
nhomalt_fin_female Integer Count of homozygous individuals in female samples of Finnish ancestry
non_cancer_AC_oth_female Integer Alternate allele count for female samples of Other ancestry in the non_cancer subset
non_cancer_AN_oth_female Integer Total number of alleles in female samples of Other ancestry in the non_cancer subset
non_cancer_AF_oth_female Float Alternate allele frequency in female samples of Other ancestry in the non_cancer subset
non_cancer_nhomalt_oth_female Integer Count of homozygous individuals in female samples of Other ancestry in the non_cancer subset
AC_nfe_bgr Integer Alternate allele count for samples of Bulgarian (Eastern European) ancestry
AN_nfe_bgr Integer Total number of alleles in samples of Bulgarian (Eastern European) ancestry
AF_nfe_bgr Float Alternate allele frequency in samples of Bulgarian (Eastern European) ancestry
nhomalt_nfe_bgr Integer Count of homozygous individuals in samples of Bulgarian (Eastern European) ancestry
non_neuro_AC_asj_female Integer Alternate allele count for female samples of Ashkenazi Jewish ancestry in the non_neuro subset
non_neuro_AN_asj_female Integer Total number of alleles in female samples of Ashkenazi Jewish ancestry in the non_neuro subset
non_neuro_AF_asj_female Float Alternate allele frequency in female samples of Ashkenazi Jewish ancestry in the non_neuro subset
non_neuro_nhomalt_asj_female Integer Count of homozygous individuals in female samples of Ashkenazi Jewish ancestry in the non_neuro subset
AC_sas_male Integer Alternate allele count for male samples of South Asian ancestry
AN_sas_male Integer Total number of alleles in male samples of South Asian ancestry
AF_sas_male Float Alternate allele frequency in male samples of South Asian ancestry
nhomalt_sas_male Integer Count of homozygous individuals in male samples of South Asian ancestry
non_neuro_AC_afr_male Integer Alternate allele count for male samples of African-American/African ancestry in the non_neuro subset
non_neuro_AN_afr_male Integer Total number of alleles in male samples of African-American/African ancestry in the non_neuro subset
non_neuro_AF_afr_male Float Alternate allele frequency in male samples of African-American/African ancestry in the non_neuro subset
non_neuro_nhomalt_afr_male Integer Count of homozygous individuals in male samples of African-American/African ancestry in the non_neuro subset
AC_afr_male Integer Alternate allele count for male samples of African-American/African ancestry
AN_afr_male Integer Total number of alleles in male samples of African-American/African ancestry
AF_afr_male Float Alternate allele frequency in male samples of African-American/African ancestry
nhomalt_afr_male Integer Count of homozygous individuals in male samples of African-American/African ancestry
AC_afr Integer Alternate allele count for samples of African-American/African ancestry
AN_afr Integer Total number of alleles in samples of African-American/African ancestry
AF_afr Float Alternate allele frequency in samples of African-American/African ancestry
nhomalt_afr Integer Count of homozygous individuals in samples of African-American/African ancestry
controls_AC_nfe_swe Integer Alternate allele count for samples of Swedish ancestry in the controls subset
controls_AN_nfe_swe Integer Total number of alleles in samples of Swedish ancestry in the controls subset
controls_AF_nfe_swe Float Alternate allele frequency in samples of Swedish ancestry in the controls subset
controls_nhomalt_nfe_swe Integer Count of homozygous individuals in samples of Swedish ancestry in the controls subset
non_neuro_AC_afr_female Integer Alternate allele count for female samples of African-American/African ancestry in the non_neuro subset
non_neuro_AN_afr_female Integer Total number of alleles in female samples of African-American/African ancestry in the non_neuro subset
non_neuro_AF_afr_female Float Alternate allele frequency in female samples of African-American/African ancestry in the non_neuro subset
non_neuro_nhomalt_afr_female Integer Count of homozygous individuals in female samples of African-American/African ancestry in the non_neuro subset
non_topmed_AC_amr_female Integer Alternate allele count for female samples of Latino ancestry in the non_topmed subset
non_topmed_AN_amr_female Integer Total number of alleles in female samples of Latino ancestry in the non_topmed subset
non_topmed_AF_amr_female Float Alternate allele frequency in female samples of Latino ancestry in the non_topmed subset
non_topmed_nhomalt_amr_female Integer Count of homozygous individuals in female samples of Latino ancestry in the non_topmed subset
non_cancer_AC_female Integer Alternate allele count for female samples in the non_cancer subset
non_cancer_AN_female Integer Total number of alleles in female samples in the non_cancer subset
non_cancer_AF_female Float Alternate allele frequency in female samples in the non_cancer subset
non_cancer_nhomalt_female Integer Count of homozygous individuals in female samples in the non_cancer subset
non_cancer_AC_nfe_onf Integer Alternate allele count for samples of Other Non-Finnish European ancestry in the non_cancer subset
non_cancer_AN_nfe_onf Integer Total number of alleles in samples of Other Non-Finnish European ancestry in the non_cancer subset
non_cancer_AF_nfe_onf Float Alternate allele frequency in samples of Other Non-Finnish European ancestry in the non_cancer subset
non_cancer_nhomalt_nfe_onf Integer Count of homozygous individuals in samples of Other Non-Finnish European ancestry in the non_cancer subset
non_cancer_AC_male Integer Alternate allele count for male samples in the non_cancer subset
non_cancer_AN_male Integer Total number of alleles in male samples in the non_cancer subset
non_cancer_AF_male Float Alternate allele frequency in male samples in the non_cancer subset
non_cancer_nhomalt_male Integer Count of homozygous individuals in male samples in the non_cancer subset
non_topmed_AC_oth_female Integer Alternate allele count for female samples of Other ancestry in the non_topmed subset
non_topmed_AN_oth_female Integer Total number of alleles in female samples of Other ancestry in the non_topmed subset
non_topmed_AF_oth_female Float Alternate allele frequency in female samples of Other ancestry in the non_topmed subset
non_topmed_nhomalt_oth_female Integer Count of homozygous individuals in female samples of Other ancestry in the non_topmed subset
AC_eas_female Integer Alternate allele count for female samples of East Asian ancestry
AN_eas_female Integer Total number of alleles in female samples of East Asian ancestry
AF_eas_female Float Alternate allele frequency in female samples of East Asian ancestry
nhomalt_eas_female Integer Count of homozygous individuals in female samples of East Asian ancestry
non_cancer_AC_sas_female Integer Alternate allele count for female samples of South Asian ancestry in the non_cancer subset
non_cancer_AN_sas_female Integer Total number of alleles in female samples of South Asian ancestry in the non_cancer subset
non_cancer_AF_sas_female Float Alternate allele frequency in female samples of South Asian ancestry in the non_cancer subset
non_cancer_nhomalt_sas_female Integer Count of homozygous individuals in female samples of South Asian ancestry in the non_cancer subset
AC_afr_female Integer Alternate allele count for female samples of African-American/African ancestry
AN_afr_female Integer Total number of alleles in female samples of African-American/African ancestry
AF_afr_female Float Alternate allele frequency in female samples of African-American/African ancestry
nhomalt_afr_female Integer Count of homozygous individuals in female samples of African-American/African ancestry
AC_sas Integer Alternate allele count for samples of South Asian ancestry
AN_sas Integer Total number of alleles in samples of South Asian ancestry
AF_sas Float Alternate allele frequency in samples of South Asian ancestry
nhomalt_sas Integer Count of homozygous individuals in samples of South Asian ancestry
non_neuro_AC_female Integer Alternate allele count for female samples in the non_neuro subset
non_neuro_AN_female Integer Total number of alleles in female samples in the non_neuro subset
non_neuro_AF_female Float Alternate allele frequency in female samples in the non_neuro subset
non_neuro_nhomalt_female Integer Count of homozygous individuals in female samples in the non_neuro subset
controls_AC_afr Integer Alternate allele count for samples of African-American/African ancestry in the controls subset
controls_AN_afr Integer Total number of alleles in samples of African-American/African ancestry in the controls subset
controls_AF_afr Float Alternate allele frequency in samples of African-American/African ancestry in the controls subset
controls_nhomalt_afr Integer Count of homozygous individuals in samples of African-American/African ancestry in the controls subset
non_neuro_AC_eas_jpn Integer Alternate allele count for samples of Japanese ancestry in the non_neuro subset
non_neuro_AN_eas_jpn Integer Total number of alleles in samples of Japanese ancestry in the non_neuro subset
non_neuro_AF_eas_jpn Float Alternate allele frequency in samples of Japanese ancestry in the non_neuro subset
non_neuro_nhomalt_eas_jpn Integer Count of homozygous individuals in samples of Japanese ancestry in the non_neuro subset
AC_nfe_onf Integer Alternate allele count for samples of Other Non-Finnish European ancestry
AN_nfe_onf Integer Total number of alleles in samples of Other Non-Finnish European ancestry
AF_nfe_onf Float Alternate allele frequency in samples of Other Non-Finnish European ancestry
nhomalt_nfe_onf Integer Count of homozygous individuals in samples of Other Non-Finnish European ancestry
non_cancer_AC_amr_male Integer Alternate allele count for male samples of Latino ancestry in the non_cancer subset
non_cancer_AN_amr_male Integer Total number of alleles in male samples of Latino ancestry in the non_cancer subset
non_cancer_AF_amr_male Float Alternate allele frequency in male samples of Latino ancestry in the non_cancer subset
non_cancer_nhomalt_amr_male Integer Count of homozygous individuals in male samples of Latino ancestry in the non_cancer subset
controls_AC_fin_male Integer Alternate allele count for male samples of Finnish ancestry in the controls subset
controls_AN_fin_male Integer Total number of alleles in male samples of Finnish ancestry in the controls subset
controls_AF_fin_male Float Alternate allele frequency in male samples of Finnish ancestry in the controls subset
controls_nhomalt_fin_male Integer Count of homozygous individuals in male samples of Finnish ancestry in the controls subset
non_neuro_AC_nfe_nwe Integer Alternate allele count for samples of North-Western European ancestry in the non_neuro subset
non_neuro_AN_nfe_nwe Integer Total number of alleles in samples of North-Western European ancestry in the non_neuro subset
non_neuro_AF_nfe_nwe Float Alternate allele frequency in samples of North-Western European ancestry in the non_neuro subset
non_neuro_nhomalt_nfe_nwe Integer Count of homozygous individuals in samples of North-Western European ancestry in the non_neuro subset
AC_fin_male Integer Alternate allele count for male samples of Finnish ancestry
AN_fin_male Integer Total number of alleles in male samples of Finnish ancestry
AF_fin_male Float Alternate allele frequency in male samples of Finnish ancestry
nhomalt_fin_male Integer Count of homozygous individuals in male samples of Finnish ancestry
AC_nfe_female Integer Alternate allele count for female samples of Non-Finnish European ancestry
AN_nfe_female Integer Total number of alleles in female samples of Non-Finnish European ancestry
AF_nfe_female Float Alternate allele frequency in female samples of Non-Finnish European ancestry
nhomalt_nfe_female Integer Count of homozygous individuals in female samples of Non-Finnish European ancestry
AC_amr Integer Alternate allele count for samples of Latino ancestry
AN_amr Integer Total number of alleles in samples of Latino ancestry
AF_amr Float Alternate allele frequency in samples of Latino ancestry
nhomalt_amr Integer Count of homozygous individuals in samples of Latino ancestry
non_topmed_AC_nfe_male Integer Alternate allele count for male samples of Non-Finnish European ancestry in the non_topmed subset
non_topmed_AN_nfe_male Integer Total number of alleles in male samples of Non-Finnish European ancestry in the non_topmed subset
non_topmed_AF_nfe_male Float Alternate allele frequency in male samples of Non-Finnish European ancestry in the non_topmed subset
non_topmed_nhomalt_nfe_male Integer Count of homozygous individuals in male samples of Non-Finnish European ancestry in the non_topmed subset
non_neuro_AC_sas Integer Alternate allele count for samples of South Asian ancestry in the non_neuro subset
non_neuro_AN_sas Integer Total number of alleles in samples of South Asian ancestry in the non_neuro subset
non_neuro_AF_sas Float Alternate allele frequency in samples of South Asian ancestry in the non_neuro subset
non_neuro_nhomalt_sas Integer Count of homozygous individuals in samples of South Asian ancestry in the non_neuro subset
non_cancer_AC_fin_male Integer Alternate allele count for male samples of Finnish ancestry in the non_cancer subset
non_cancer_AN_fin_male Integer Total number of alleles in male samples of Finnish ancestry in the non_cancer subset
non_cancer_AF_fin_male Float Alternate allele frequency in male samples of Finnish ancestry in the non_cancer subset
non_cancer_nhomalt_fin_male Integer Count of homozygous individuals in male samples of Finnish ancestry in the non_cancer subset
non_cancer_AC_nfe_seu Integer Alternate allele count for samples of Southern European ancestry in the non_cancer subset
non_cancer_AN_nfe_seu Integer Total number of alleles in samples of Southern European ancestry in the non_cancer subset
non_cancer_AF_nfe_seu Float Alternate allele frequency in samples of Southern European ancestry in the non_cancer subset
non_cancer_nhomalt_nfe_seu Integer Count of homozygous individuals in samples of Southern European ancestry in the non_cancer subset
AC_eas Integer Alternate allele count for samples of East Asian ancestry
AN_eas Integer Total number of alleles in samples of East Asian ancestry
AF_eas Float Alternate allele frequency in samples of East Asian ancestry
nhomalt_eas Integer Count of homozygous individuals in samples of East Asian ancestry
nhomalt Integer Count of homozygous individuals in samples
non_neuro_AC_nfe_female Integer Alternate allele count for female samples of Non-Finnish European ancestry in the non_neuro subset
non_neuro_AN_nfe_female Integer Total number of alleles in female samples of Non-Finnish European ancestry in the non_neuro subset
non_neuro_AF_nfe_female Float Alternate allele frequency in female samples of Non-Finnish European ancestry in the non_neuro subset
non_neuro_nhomalt_nfe_female Integer Count of homozygous individuals in female samples of Non-Finnish European ancestry in the non_neuro subset
non_neuro_AC_afr Integer Alternate allele count for samples of African-American/African ancestry in the non_neuro subset
non_neuro_AN_afr Integer Total number of alleles in samples of African-American/African ancestry in the non_neuro subset
non_neuro_AF_afr Float Alternate allele frequency in samples of African-American/African ancestry in the non_neuro subset
non_neuro_nhomalt_afr Integer Count of homozygous individuals in samples of African-American/African ancestry in the non_neuro subset
controls_AC_raw Integer Alternate allele count for samples in the controls subset
controls_AN_raw Integer Total number of alleles in samples in the controls subset
controls_AF_raw Float Alternate allele frequency in samples in the controls subset
controls_nhomalt_raw Integer Count of homozygous individuals in samples in the controls subset
non_cancer_AC_eas Integer Alternate allele count for samples of East Asian ancestry in the non_cancer subset
non_cancer_AN_eas Integer Total number of alleles in samples of East Asian ancestry in the non_cancer subset
non_cancer_AF_eas Float Alternate allele frequency in samples of East Asian ancestry in the non_cancer subset
non_cancer_nhomalt_eas Integer Count of homozygous individuals in samples of East Asian ancestry in the non_cancer subset
non_cancer_AC_amr_female Integer Alternate allele count for female samples of Latino ancestry in the non_cancer subset
non_cancer_AN_amr_female Integer Total number of alleles in female samples of Latino ancestry in the non_cancer subset
non_cancer_AF_amr_female Float Alternate allele frequency in female samples of Latino ancestry in the non_cancer subset
non_cancer_nhomalt_amr_female Integer Count of homozygous individuals in female samples of Latino ancestry in the non_cancer subset
non_neuro_AC_nfe_swe Integer Alternate allele count for samples of Swedish ancestry in the non_neuro subset
non_neuro_AN_nfe_swe Integer Total number of alleles in samples of Swedish ancestry in the non_neuro subset
non_neuro_AF_nfe_swe Float Alternate allele frequency in samples of Swedish ancestry in the non_neuro subset
non_neuro_nhomalt_nfe_swe Integer Count of homozygous individuals in samples of Swedish ancestry in the non_neuro subset
controls_AC_male Integer Alternate allele count for male samples in the controls subset
controls_AN_male Integer Total number of alleles in male samples in the controls subset
controls_AF_male Float Alternate allele frequency in male samples in the controls subset
controls_nhomalt_male Integer Count of homozygous individuals in male samples in the controls subset
non_topmed_AC_male Integer Alternate allele count for male samples in the non_topmed subset
non_topmed_AN_male Integer Total number of alleles in male samples in the non_topmed subset
non_topmed_AF_male Float Alternate allele frequency in male samples in the non_topmed subset
non_topmed_nhomalt_male Integer Count of homozygous individuals in male samples in the non_topmed subset
controls_AC_eas_jpn Integer Alternate allele count for samples of Japanese ancestry in the controls subset
controls_AN_eas_jpn Integer Total number of alleles in samples of Japanese ancestry in the controls subset
controls_AF_eas_jpn Float Alternate allele frequency in samples of Japanese ancestry in the controls subset
controls_nhomalt_eas_jpn Integer Count of homozygous individuals in samples of Japanese ancestry in the controls subset
controls_AC_nfe_female Integer Alternate allele count for female samples of Non-Finnish European ancestry in the controls subset
controls_AN_nfe_female Integer Total number of alleles in female samples of Non-Finnish European ancestry in the controls subset
controls_AF_nfe_female Float Alternate allele frequency in female samples of Non-Finnish European ancestry in the controls subset
controls_nhomalt_nfe_female Integer Count of homozygous individuals in female samples of Non-Finnish European ancestry in the controls subset
non_neuro_AC_amr Integer Alternate allele count for samples of Latino ancestry in the non_neuro subset
non_neuro_AN_amr Integer Total number of alleles in samples of Latino ancestry in the non_neuro subset
non_neuro_AF_amr Float Alternate allele frequency in samples of Latino ancestry in the non_neuro subset
non_neuro_nhomalt_amr Integer Count of homozygous individuals in samples of Latino ancestry in the non_neuro subset
non_neuro_AC_eas_female Integer Alternate allele count for female samples of East Asian ancestry in the non_neuro subset
non_neuro_AN_eas_female Integer Total number of alleles in female samples of East Asian ancestry in the non_neuro subset
non_neuro_AF_eas_female Float Alternate allele frequency in female samples of East Asian ancestry in the non_neuro subset
non_neuro_nhomalt_eas_female Integer Count of homozygous individuals in female samples of East Asian ancestry in the non_neuro subset
AC_asj_male Integer Alternate allele count for male samples of Ashkenazi Jewish ancestry
AN_asj_male Integer Total number of alleles in male samples of Ashkenazi Jewish ancestry
AF_asj_male Float Alternate allele frequency in male samples of Ashkenazi Jewish ancestry
nhomalt_asj_male Integer Count of homozygous individuals in male samples of Ashkenazi Jewish ancestry
controls_AC_nfe_male Integer Alternate allele count for male samples of Non-Finnish European ancestry in the controls subset
controls_AN_nfe_male Integer Total number of alleles in male samples of Non-Finnish European ancestry in the controls subset
controls_AF_nfe_male Float Alternate allele frequency in male samples of Non-Finnish European ancestry in the controls subset
controls_nhomalt_nfe_male Integer Count of homozygous individuals in male samples of Non-Finnish European ancestry in the controls subset
non_neuro_AC_fin Integer Alternate allele count for samples of Finnish ancestry in the non_neuro subset
non_neuro_AN_fin Integer Total number of alleles in samples of Finnish ancestry in the non_neuro subset
non_neuro_AF_fin Float Alternate allele frequency in samples of Finnish ancestry in the non_neuro subset
non_neuro_nhomalt_fin Integer Count of homozygous individuals in samples of Finnish ancestry in the non_neuro subset
non_topmed_AC_sas Integer Alternate allele count for samples of South Asian ancestry in the non_topmed subset
non_topmed_AN_sas Integer Total number of alleles in samples of South Asian ancestry in the non_topmed subset
non_topmed_AF_sas Float Alternate allele frequency in samples of South Asian ancestry in the non_topmed subset
non_topmed_nhomalt_sas Integer Count of homozygous individuals in samples of South Asian ancestry in the non_topmed subset
non_cancer_AC_nfe_female Integer Alternate allele count for female samples of Non-Finnish European ancestry in the non_cancer subset
non_cancer_AN_nfe_female Integer Total number of alleles in female samples of Non-Finnish European ancestry in the non_cancer subset
non_cancer_AF_nfe_female Float Alternate allele frequency in female samples of Non-Finnish European ancestry in the non_cancer subset
non_cancer_nhomalt_nfe_female Integer Count of homozygous individuals in female samples of Non-Finnish European ancestry in the non_cancer subset
AC_oth_female Integer Alternate allele count for female samples of Other ancestry
AN_oth_female Integer Total number of alleles in female samples of Other ancestry
AF_oth_female Float Alternate allele frequency in female samples of Other ancestry
nhomalt_oth_female Integer Count of homozygous individuals in female samples of Other ancestry
non_cancer_AC_asj Integer Alternate allele count for samples of Ashkenazi Jewish ancestry in the non_cancer subset
non_cancer_AN_asj Integer Total number of alleles in samples of Ashkenazi Jewish ancestry in the non_cancer subset
non_cancer_AF_asj Float Alternate allele frequency in samples of Ashkenazi Jewish ancestry in the non_cancer subset
non_cancer_nhomalt_asj Integer Count of homozygous individuals in samples of Ashkenazi Jewish ancestry in the non_cancer subset
AC_nfe_swe Integer Alternate allele count for samples of Swedish ancestry
AN_nfe_swe Integer Total number of alleles in samples of Swedish ancestry
AF_nfe_swe Float Alternate allele frequency in samples of Swedish ancestry
nhomalt_nfe_swe Integer Count of homozygous individuals in samples of Swedish ancestry
controls_AC_nfe Integer Alternate allele count for samples of Non-Finnish European ancestry in the controls subset
controls_AN_nfe Integer Total number of alleles in samples of Non-Finnish European ancestry in the controls subset
controls_AF_nfe Float Alternate allele frequency in samples of Non-Finnish European ancestry in the controls subset
controls_nhomalt_nfe Integer Count of homozygous individuals in samples of Non-Finnish European ancestry in the controls subset
controls_AC_oth_female Integer Alternate allele count for female samples of Other ancestry in the controls subset
controls_AN_oth_female Integer Total number of alleles in female samples of Other ancestry in the controls subset
controls_AF_oth_female Float Alternate allele frequency in female samples of Other ancestry in the controls subset
controls_nhomalt_oth_female Integer Count of homozygous individuals in female samples of Other ancestry in the controls subset
controls_AC_asj Integer Alternate allele count for samples of Ashkenazi Jewish ancestry in the controls subset
controls_AN_asj Integer Total number of alleles in samples of Ashkenazi Jewish ancestry in the controls subset
controls_AF_asj Float Alternate allele frequency in samples of Ashkenazi Jewish ancestry in the controls subset
controls_nhomalt_asj Integer Count of homozygous individuals in samples of Ashkenazi Jewish ancestry in the controls subset
non_neuro_AC_amr_male Integer Alternate allele count for male samples of Latino ancestry in the non_neuro subset
non_neuro_AN_amr_male Integer Total number of alleles in male samples of Latino ancestry in the non_neuro subset
non_neuro_AF_amr_male Float Alternate allele frequency in male samples of Latino ancestry in the non_neuro subset
non_neuro_nhomalt_amr_male Integer Count of homozygous individuals in male samples of Latino ancestry in the non_neuro subset
controls_AC_nfe_nwe Integer Alternate allele count for samples of North-Western European ancestry in the controls subset
controls_AN_nfe_nwe Integer Total number of alleles in samples of North-Western European ancestry in the controls subset
controls_AF_nfe_nwe Float Alternate allele frequency in samples of North-Western European ancestry in the controls subset
controls_nhomalt_nfe_nwe Integer Count of homozygous individuals in samples of North-Western European ancestry in the controls subset
AC_nfe_nwe Integer Alternate allele count for samples of North-Western European ancestry
AN_nfe_nwe Integer Total number of alleles in samples of North-Western European ancestry
AF_nfe_nwe Float Alternate allele frequency in samples of North-Western European ancestry
nhomalt_nfe_nwe Integer Count of homozygous individuals in samples of North-Western European ancestry
controls_AC_nfe_seu Integer Alternate allele count for samples of Southern European ancestry in the controls subset
controls_AN_nfe_seu Integer Total number of alleles in samples of Southern European ancestry in the controls subset
controls_AF_nfe_seu Float Alternate allele frequency in samples of Southern European ancestry in the controls subset
controls_nhomalt_nfe_seu Integer Count of homozygous individuals in samples of Southern European ancestry in the controls subset
controls_AC_sas_female Integer Alternate allele count for female samples of South Asian ancestry in the controls subset
controls_AN_sas_female Integer Total number of alleles in female samples of South Asian ancestry in the controls subset
controls_AF_sas_female Float Alternate allele frequency in female samples of South Asian ancestry in the controls subset
controls_nhomalt_sas_female Integer Count of homozygous individuals in female samples of South Asian ancestry in the controls subset
non_neuro_AC_amr_female Integer Alternate allele count for female samples of Latino ancestry in the non_neuro subset
non_neuro_AN_amr_female Integer Total number of alleles in female samples of Latino ancestry in the non_neuro subset
non_neuro_AF_amr_female Float Alternate allele frequency in female samples of Latino ancestry in the non_neuro subset
non_neuro_nhomalt_amr_female Integer Count of homozygous individuals in female samples of Latino ancestry in the non_neuro subset
non_cancer_AC_eas_jpn Integer Alternate allele count for samples of Japanese ancestry in the non_cancer subset
non_cancer_AN_eas_jpn Integer Total number of alleles in samples of Japanese ancestry in the non_cancer subset
non_cancer_AF_eas_jpn Float Alternate allele frequency in samples of Japanese ancestry in the non_cancer subset
non_cancer_nhomalt_eas_jpn Integer Count of homozygous individuals in samples of Japanese ancestry in the non_cancer subset
non_neuro_AC_nfe_onf Integer Alternate allele count for samples of Other Non-Finnish European ancestry in the non_neuro subset
non_neuro_AN_nfe_onf Integer Total number of alleles in samples of Other Non-Finnish European ancestry in the non_neuro subset
non_neuro_AF_nfe_onf Float Alternate allele frequency in samples of Other Non-Finnish European ancestry in the non_neuro subset
non_neuro_nhomalt_nfe_onf Integer Count of homozygous individuals in samples of Other Non-Finnish European ancestry in the non_neuro subset
non_topmed_AC_eas_male Integer Alternate allele count for male samples of East Asian ancestry in the non_topmed subset
non_topmed_AN_eas_male Integer Total number of alleles in male samples of East Asian ancestry in the non_topmed subset
non_topmed_AF_eas_male Float Alternate allele frequency in male samples of East Asian ancestry in the non_topmed subset
non_topmed_nhomalt_eas_male Integer Count of homozygous individuals in male samples of East Asian ancestry in the non_topmed subset
AC_eas_jpn Integer Alternate allele count for samples of Japanese ancestry
AN_eas_jpn Integer Total number of alleles in samples of Japanese ancestry
AF_eas_jpn Float Alternate allele frequency in samples of Japanese ancestry
nhomalt_eas_jpn Integer Count of homozygous individuals in samples of Japanese ancestry
non_cancer_AC_afr_male Integer Alternate allele count for male samples of African-American/African ancestry in the non_cancer subset
non_cancer_AN_afr_male Integer Total number of alleles in male samples of African-American/African ancestry in the non_cancer subset
non_cancer_AF_afr_male Float Alternate allele frequency in male samples of African-American/African ancestry in the non_cancer subset
non_cancer_nhomalt_afr_male Integer Count of homozygous individuals in male samples of African-American/African ancestry in the non_cancer subset
non_cancer_AC_afr Integer Alternate allele count for samples of African-American/African ancestry in the non_cancer subset
non_cancer_AN_afr Integer Total number of alleles in samples of African-American/African ancestry in the non_cancer subset
non_cancer_AF_afr Float Alternate allele frequency in samples of African-American/African ancestry in the non_cancer subset
non_cancer_nhomalt_afr Integer Count of homozygous individuals in samples of African-American/African ancestry in the non_cancer subset
controls_AC_amr_female Integer Alternate allele count for female samples of Latino ancestry in the controls subset
controls_AN_amr_female Integer Total number of alleles in female samples of Latino ancestry in the controls subset
controls_AF_amr_female Float Alternate allele frequency in female samples of Latino ancestry in the controls subset
controls_nhomalt_amr_female Integer Count of homozygous individuals in female samples of Latino ancestry in the controls subset
non_neuro_AC_fin_male Integer Alternate allele count for male samples of Finnish ancestry in the non_neuro subset
non_neuro_AN_fin_male Integer Total number of alleles in male samples of Finnish ancestry in the non_neuro subset
non_neuro_AF_fin_male Float Alternate allele frequency in male samples of Finnish ancestry in the non_neuro subset
non_neuro_nhomalt_fin_male Integer Count of homozygous individuals in male samples of Finnish ancestry in the non_neuro subset
AC_female Integer Alternate allele count for female samples
AN_female Integer Total number of alleles in female samples
AF_female Float Alternate allele frequency in female samples
nhomalt_female Integer Count of homozygous individuals in female samples
non_neuro_AC_nfe_bgr Integer Alternate allele count for samples of Bulgarian (Eastern European) ancestry in the non_neuro subset
non_neuro_AN_nfe_bgr Integer Total number of alleles in samples of Bulgarian (Eastern European) ancestry in the non_neuro subset
non_neuro_AF_nfe_bgr Float Alternate allele frequency in samples of Bulgarian (Eastern European) ancestry in the non_neuro subset
non_neuro_nhomalt_nfe_bgr Integer Count of homozygous individuals in samples of Bulgarian (Eastern European) ancestry in the non_neuro subset
non_neuro_AC_oth_male Integer Alternate allele count for male samples of Other ancestry in the non_neuro subset
non_neuro_AN_oth_male Integer Total number of alleles in male samples of Other ancestry in the non_neuro subset
non_neuro_AF_oth_male Float Alternate allele frequency in male samples of Other ancestry in the non_neuro subset
non_neuro_nhomalt_oth_male Integer Count of homozygous individuals in male samples of Other ancestry in the non_neuro subset
non_topmed_AC_nfe_est Integer Alternate allele count for samples of Estonian ancestry in the non_topmed subset
non_topmed_AN_nfe_est Integer Total number of alleles in samples of Estonian ancestry in the non_topmed subset
non_topmed_AF_nfe_est Float Alternate allele frequency in samples of Estonian ancestry in the non_topmed subset
non_topmed_nhomalt_nfe_est Integer Count of homozygous individuals in samples of Estonian ancestry in the non_topmed subset
non_topmed_AC_nfe_nwe Integer Alternate allele count for samples of North-Western European ancestry in the non_topmed subset
non_topmed_AN_nfe_nwe Integer Total number of alleles in samples of North-Western European ancestry in the non_topmed subset
non_topmed_AF_nfe_nwe Float Alternate allele frequency in samples of North-Western European ancestry in the non_topmed subset
non_topmed_nhomalt_nfe_nwe Integer Count of homozygous individuals in samples of North-Western European ancestry in the non_topmed subset
non_topmed_AC_amr_male Integer Alternate allele count for male samples of Latino ancestry in the non_topmed subset
non_topmed_AN_amr_male Integer Total number of alleles in male samples of Latino ancestry in the non_topmed subset
non_topmed_AF_amr_male Float Alternate allele frequency in male samples of Latino ancestry in the non_topmed subset
non_topmed_nhomalt_amr_male Integer Count of homozygous individuals in male samples of Latino ancestry in the non_topmed subset
non_cancer_AC_amr Integer Alternate allele count for samples of Latino ancestry in the non_cancer subset
non_cancer_AN_amr Integer Total number of alleles in samples of Latino ancestry in the non_cancer subset
non_cancer_AF_amr Float Alternate allele frequency in samples of Latino ancestry in the non_cancer subset
non_cancer_nhomalt_amr Integer Count of homozygous individuals in samples of Latino ancestry in the non_cancer subset
non_topmed_AC_nfe_swe Integer Alternate allele count for samples of Swedish ancestry in the non_topmed subset
non_topmed_AN_nfe_swe Integer Total number of alleles in samples of Swedish ancestry in the non_topmed subset
non_topmed_AF_nfe_swe Float Alternate allele frequency in samples of Swedish ancestry in the non_topmed subset
non_topmed_nhomalt_nfe_swe Integer Count of homozygous individuals in samples of Swedish ancestry in the non_topmed subset
non_topmed_AC_nfe_onf Integer Alternate allele count for samples of Other Non-Finnish European ancestry in the non_topmed subset
non_topmed_AN_nfe_onf Integer Total number of alleles in samples of Other Non-Finnish European ancestry in the non_topmed subset
non_topmed_AF_nfe_onf Float Alternate allele frequency in samples of Other Non-Finnish European ancestry in the non_topmed subset
non_topmed_nhomalt_nfe_onf Integer Count of homozygous individuals in samples of Other Non-Finnish European ancestry in the non_topmed subset
controls_AC_eas_kor Integer Alternate allele count for samples of Korean ancestry in the controls subset
controls_AN_eas_kor Integer Total number of alleles in samples of Korean ancestry in the controls subset
controls_AF_eas_kor Float Alternate allele frequency in samples of Korean ancestry in the controls subset
controls_nhomalt_eas_kor Integer Count of homozygous individuals in samples of Korean ancestry in the controls subset
non_topmed_AC_eas_oea Integer Alternate allele count for samples of Other East Asian ancestry in the non_topmed subset
non_topmed_AN_eas_oea Integer Total number of alleles in samples of Other East Asian ancestry in the non_topmed subset
non_topmed_AF_eas_oea Float Alternate allele frequency in samples of Other East Asian ancestry in the non_topmed subset
non_topmed_nhomalt_eas_oea Integer Count of homozygous individuals in samples of Other East Asian ancestry in the non_topmed subset
controls_AC_eas_male Integer Alternate allele count for male samples of East Asian ancestry in the controls subset
controls_AN_eas_male Integer Total number of alleles in male samples of East Asian ancestry in the controls subset
controls_AF_eas_male Float Alternate allele frequency in male samples of East Asian ancestry in the controls subset
controls_nhomalt_eas_male Integer Count of homozygous individuals in male samples of East Asian ancestry in the controls subset
controls_AC_oth_male Integer Alternate allele count for male samples of Other ancestry in the controls subset
controls_AN_oth_male Integer Total number of alleles in male samples of Other ancestry in the controls subset
controls_AF_oth_male Float Alternate allele frequency in male samples of Other ancestry in the controls subset
controls_nhomalt_oth_male Integer Count of homozygous individuals in male samples of Other ancestry in the controls subset
non_topmed_AC Integer Alternate allele count for samples in the non_topmed subset
non_topmed_AN Integer Total number of alleles in samples in the non_topmed subset
non_topmed_AF Float Alternate allele frequency in samples in the non_topmed subset
non_topmed_nhomalt Integer Count of homozygous individuals in samples in the non_topmed subset
controls_AC_fin Integer Alternate allele count for samples of Finnish ancestry in the controls subset
controls_AN_fin Integer Total number of alleles in samples of Finnish ancestry in the controls subset
controls_AF_fin Float Alternate allele frequency in samples of Finnish ancestry in the controls subset
controls_nhomalt_fin Integer Count of homozygous individuals in samples of Finnish ancestry in the controls subset
AC_eas_kor Integer Alternate allele count for samples of Korean ancestry
AN_eas_kor Integer Total number of alleles in samples of Korean ancestry
AF_eas_kor Float Alternate allele frequency in samples of Korean ancestry
nhomalt_eas_kor Integer Count of homozygous individuals in samples of Korean ancestry
non_neuro_AC_nfe Integer Alternate allele count for samples of Non-Finnish European ancestry in the non_neuro subset
non_neuro_AN_nfe Integer Total number of alleles in samples of Non-Finnish European ancestry in the non_neuro subset
non_neuro_AF_nfe Float Alternate allele frequency in samples of Non-Finnish European ancestry in the non_neuro subset
non_neuro_nhomalt_nfe Integer Count of homozygous individuals in samples of Non-Finnish European ancestry in the non_neuro subset
non_neuro_AC_fin_female Integer Alternate allele count for female samples of Finnish ancestry in the non_neuro subset
non_neuro_AN_fin_female Integer Total number of alleles in female samples of Finnish ancestry in the non_neuro subset
non_neuro_AF_fin_female Float Alternate allele frequency in female samples of Finnish ancestry in the non_neuro subset
non_neuro_nhomalt_fin_female Integer Count of homozygous individuals in female samples of Finnish ancestry in the non_neuro subset
non_cancer_AC_nfe_male Integer Alternate allele count for male samples of Non-Finnish European ancestry in the non_cancer subset
non_cancer_AN_nfe_male Integer Total number of alleles in male samples of Non-Finnish European ancestry in the non_cancer subset
non_cancer_AF_nfe_male Float Alternate allele frequency in male samples of Non-Finnish European ancestry in the non_cancer subset
non_cancer_nhomalt_nfe_male Integer Count of homozygous individuals in male samples of Non-Finnish European ancestry in the non_cancer subset
controls_AC_eas_oea Integer Alternate allele count for samples of Other East Asian ancestry in the controls subset
controls_AN_eas_oea Integer Total number of alleles in samples of Other East Asian ancestry in the controls subset
controls_AF_eas_oea Float Alternate allele frequency in samples of Other East Asian ancestry in the controls subset
controls_nhomalt_eas_oea Integer Count of homozygous individuals in samples of Other East Asian ancestry in the controls subset
non_topmed_AC_nfe_seu Integer Alternate allele count for samples of Southern European ancestry in the non_topmed subset
non_topmed_AN_nfe_seu Integer Total number of alleles in samples of Southern European ancestry in the non_topmed subset
non_topmed_AF_nfe_seu Float Alternate allele frequency in samples of Southern European ancestry in the non_topmed subset
non_topmed_nhomalt_nfe_seu Integer Count of homozygous individuals in samples of Southern European ancestry in the non_topmed subset
controls_AC_eas_female Integer Alternate allele count for female samples of East Asian ancestry in the controls subset
controls_AN_eas_female Integer Total number of alleles in female samples of East Asian ancestry in the controls subset
controls_AF_eas_female Float Alternate allele frequency in female samples of East Asian ancestry in the controls subset
controls_nhomalt_eas_female Integer Count of homozygous individuals in female samples of East Asian ancestry in the controls subset
non_topmed_AC_asj Integer Alternate allele count for samples of Ashkenazi Jewish ancestry in the non_topmed subset
non_topmed_AN_asj Integer Total number of alleles in samples of Ashkenazi Jewish ancestry in the non_topmed subset
non_topmed_AF_asj Float Alternate allele frequency in samples of Ashkenazi Jewish ancestry in the non_topmed subset
non_topmed_nhomalt_asj Integer Count of homozygous individuals in samples of Ashkenazi Jewish ancestry in the non_topmed subset
controls_AC_nfe_onf Integer Alternate allele count for samples of Other Non-Finnish European ancestry in the controls subset
controls_AN_nfe_onf Integer Total number of alleles in samples of Other Non-Finnish European ancestry in the controls subset
controls_AF_nfe_onf Float Alternate allele frequency in samples of Other Non-Finnish European ancestry in the controls subset
controls_nhomalt_nfe_onf Integer Count of homozygous individuals in samples of Other Non-Finnish European ancestry in the controls subset
non_neuro_AC Integer Alternate allele count for samples in the non_neuro subset
non_neuro_AN Integer Total number of alleles in samples in the non_neuro subset
non_neuro_AF Float Alternate allele frequency in samples in the non_neuro subset
non_neuro_nhomalt Integer Count of homozygous individuals in samples in the non_neuro subset
AC_eas_oea Integer Alternate allele count for samples of Other East Asian ancestry
AN_eas_oea Integer Total number of alleles in samples of Other East Asian ancestry
AF_eas_oea Float Alternate allele frequency in samples of Other East Asian ancestry
nhomalt_eas_oea Integer Count of homozygous individuals in samples of Other East Asian ancestry
non_topmed_AC_nfe Integer Alternate allele count for samples of Non-Finnish European ancestry in the non_topmed subset
non_topmed_AN_nfe Integer Total number of alleles in samples of Non-Finnish European ancestry in the non_topmed subset
non_topmed_AF_nfe Float Alternate allele frequency in samples of Non-Finnish European ancestry in the non_topmed subset
non_topmed_nhomalt_nfe Integer Count of homozygous individuals in samples of Non-Finnish European ancestry in the non_topmed subset
non_cancer_AC_oth Integer Alternate allele count for samples of Other ancestry in the non_cancer subset
non_cancer_AN_oth Integer Total number of alleles in samples of Other ancestry in the non_cancer subset
non_cancer_AF_oth Float Alternate allele frequency in samples of Other ancestry in the non_cancer subset
non_cancer_nhomalt_oth Integer Count of homozygous individuals in samples of Other ancestry in the non_cancer subset
non_topmed_AC_raw Integer Alternate allele count for samples in the non_topmed subset
non_topmed_AN_raw Integer Total number of alleles in samples in the non_topmed subset
non_topmed_AF_raw Float Alternate allele frequency in samples in the non_topmed subset
non_topmed_nhomalt_raw Integer Count of homozygous individuals in samples in the non_topmed subset
non_neuro_AC_nfe_est Integer Alternate allele count for samples of Estonian ancestry in the non_neuro subset
non_neuro_AN_nfe_est Integer Total number of alleles in samples of Estonian ancestry in the non_neuro subset
non_neuro_AF_nfe_est Float Alternate allele frequency in samples of Estonian ancestry in the non_neuro subset
non_neuro_nhomalt_nfe_est Integer Count of homozygous individuals in samples of Estonian ancestry in the non_neuro subset
non_topmed_AC_oth_male Integer Alternate allele count for male samples of Other ancestry in the non_topmed subset
non_topmed_AN_oth_male Integer Total number of alleles in male samples of Other ancestry in the non_topmed subset
non_topmed_AF_oth_male Float Alternate allele frequency in male samples of Other ancestry in the non_topmed subset
non_topmed_nhomalt_oth_male Integer Count of homozygous individuals in male samples of Other ancestry in the non_topmed subset
non_cancer_AC_oth_male Integer Alternate allele count for male samples of Other ancestry in the non_cancer subset
non_cancer_AN_oth_male Integer Total number of alleles in male samples of Other ancestry in the non_cancer subset
non_cancer_AF_oth_male Float Alternate allele frequency in male samples of Other ancestry in the non_cancer subset
non_cancer_nhomalt_oth_male Integer Count of homozygous individuals in male samples of Other ancestry in the non_cancer subset
AC_nfe_est Integer Alternate allele count for samples of Estonian ancestry
AN_nfe_est Integer Total number of alleles in samples of Estonian ancestry
AF_nfe_est Float Alternate allele frequency in samples of Estonian ancestry
nhomalt_nfe_est Integer Count of homozygous individuals in samples of Estonian ancestry
non_cancer_AC_afr_female Integer Alternate allele count for female samples of African-American/African ancestry in the non_cancer subset
non_cancer_AN_afr_female Integer Total number of alleles in female samples of African-American/African ancestry in the non_cancer subset
non_cancer_AF_afr_female Float Alternate allele frequency in female samples of African-American/African ancestry in the non_cancer subset
non_cancer_nhomalt_afr_female Integer Count of homozygous individuals in female samples of African-American/African ancestry in the non_cancer subset
non_topmed_AC_afr_male Integer Alternate allele count for male samples of African-American/African ancestry in the non_topmed subset
non_topmed_AN_afr_male Integer Total number of alleles in male samples of African-American/African ancestry in the non_topmed subset
non_topmed_AF_afr_male Float Alternate allele frequency in male samples of African-American/African ancestry in the non_topmed subset
non_topmed_nhomalt_afr_male Integer Count of homozygous individuals in male samples of African-American/African ancestry in the non_topmed subset
AC_eas_male Integer Alternate allele count for male samples of East Asian ancestry
AN_eas_male Integer Total number of alleles in male samples of East Asian ancestry
AF_eas_male Float Alternate allele frequency in male samples of East Asian ancestry
nhomalt_eas_male Integer Count of homozygous individuals in male samples of East Asian ancestry
controls_AC_eas Integer Alternate allele count for samples of East Asian ancestry in the controls subset
controls_AN_eas Integer Total number of alleles in samples of East Asian ancestry in the controls subset
controls_AF_eas Float Alternate allele frequency in samples of East Asian ancestry in the controls subset
controls_nhomalt_eas Integer Count of homozygous individuals in samples of East Asian ancestry in the controls subset
non_neuro_AC_eas_male Integer Alternate allele count for male samples of East Asian ancestry in the non_neuro subset
non_neuro_AN_eas_male Integer Total number of alleles in male samples of East Asian ancestry in the non_neuro subset
non_neuro_AF_eas_male Float Alternate allele frequency in male samples of East Asian ancestry in the non_neuro subset
non_neuro_nhomalt_eas_male Integer Count of homozygous individuals in male samples of East Asian ancestry in the non_neuro subset
non_cancer_AC_nfe_nwe Integer Alternate allele count for samples of North-Western European ancestry in the non_cancer subset
non_cancer_AN_nfe_nwe Integer Total number of alleles in samples of North-Western European ancestry in the non_cancer subset
non_cancer_AF_nfe_nwe Float Alternate allele frequency in samples of North-Western European ancestry in the non_cancer subset
non_cancer_nhomalt_nfe_nwe Integer Count of homozygous individuals in samples of North-Western European ancestry in the non_cancer subset
controls_AC_sas Integer Alternate allele count for samples of South Asian ancestry in the controls subset
controls_AN_sas Integer Total number of alleles in samples of South Asian ancestry in the controls subset
controls_AF_sas Float Alternate allele frequency in samples of South Asian ancestry in the controls subset
controls_nhomalt_sas Integer Count of homozygous individuals in samples of South Asian ancestry in the controls subset
non_neuro_AC_sas_male Integer Alternate allele count for male samples of South Asian ancestry in the non_neuro subset
non_neuro_AN_sas_male Integer Total number of alleles in male samples of South Asian ancestry in the non_neuro subset
non_neuro_AF_sas_male Float Alternate allele frequency in male samples of South Asian ancestry in the non_neuro subset
non_neuro_nhomalt_sas_male Integer Count of homozygous individuals in male samples of South Asian ancestry in the non_neuro subset
non_neuro_AC_asj_male Integer Alternate allele count for male samples of Ashkenazi Jewish ancestry in the non_neuro subset
non_neuro_AN_asj_male Integer Total number of alleles in male samples of Ashkenazi Jewish ancestry in the non_neuro subset
non_neuro_AF_asj_male Float Alternate allele frequency in male samples of Ashkenazi Jewish ancestry in the non_neuro subset
non_neuro_nhomalt_asj_male Integer Count of homozygous individuals in male samples of Ashkenazi Jewish ancestry in the non_neuro subset
non_cancer_AC_nfe_bgr Integer Alternate allele count for samples of Bulgarian (Eastern European) ancestry in the non_cancer subset
non_cancer_AN_nfe_bgr Integer Total number of alleles in samples of Bulgarian (Eastern European) ancestry in the non_cancer subset
non_cancer_AF_nfe_bgr Float Alternate allele frequency in samples of Bulgarian (Eastern European) ancestry in the non_cancer subset
non_cancer_nhomalt_nfe_bgr Integer Count of homozygous individuals in samples of Bulgarian (Eastern European) ancestry in the non_cancer subset
controls_AC_oth Integer Alternate allele count for samples of Other ancestry in the controls subset
controls_AN_oth Integer Total number of alleles in samples of Other ancestry in the controls subset
controls_AF_oth Float Alternate allele frequency in samples of Other ancestry in the controls subset
controls_nhomalt_oth Integer Count of homozygous individuals in samples of Other ancestry in the controls subset
non_cancer_AC_eas_female Integer Alternate allele count for female samples of East Asian ancestry in the non_cancer subset
non_cancer_AN_eas_female Integer Total number of alleles in female samples of East Asian ancestry in the non_cancer subset
non_cancer_AF_eas_female Float Alternate allele frequency in female samples of East Asian ancestry in the non_cancer subset
non_cancer_nhomalt_eas_female Integer Count of homozygous individuals in female samples of East Asian ancestry in the non_cancer subset
AC_nfe Integer Alternate allele count for samples of Non-Finnish European ancestry
AN_nfe Integer Total number of alleles in samples of Non-Finnish European ancestry
AF_nfe Float Alternate allele frequency in samples of Non-Finnish European ancestry
nhomalt_nfe Integer Count of homozygous individuals in samples of Non-Finnish European ancestry
non_topmed_AC_female Integer Alternate allele count for female samples in the non_topmed subset
non_topmed_AN_female Integer Total number of alleles in female samples in the non_topmed subset
non_topmed_AF_female Float Alternate allele frequency in female samples in the non_topmed subset
non_topmed_nhomalt_female Integer Count of homozygous individuals in female samples in the non_topmed subset
non_neuro_AC_asj Integer Alternate allele count for samples of Ashkenazi Jewish ancestry in the non_neuro subset
non_neuro_AN_asj Integer Total number of alleles in samples of Ashkenazi Jewish ancestry in the non_neuro subset
non_neuro_AF_asj Float Alternate allele frequency in samples of Ashkenazi Jewish ancestry in the non_neuro subset
non_neuro_nhomalt_asj Integer Count of homozygous individuals in samples of Ashkenazi Jewish ancestry in the non_neuro subset
non_topmed_AC_eas_female Integer Alternate allele count for female samples of East Asian ancestry in the non_topmed subset
non_topmed_AN_eas_female Integer Total number of alleles in female samples of East Asian ancestry in the non_topmed subset
non_topmed_AF_eas_female Float Alternate allele frequency in female samples of East Asian ancestry in the non_topmed subset
non_topmed_nhomalt_eas_female Integer Count of homozygous individuals in female samples of East Asian ancestry in the non_topmed subset
non_neuro_AC_raw Integer Alternate allele count for samples in the non_neuro subset
non_neuro_AN_raw Integer Total number of alleles in samples in the non_neuro subset
non_neuro_AF_raw Float Alternate allele frequency in samples in the non_neuro subset
non_neuro_nhomalt_raw Integer Count of homozygous individuals in samples in the non_neuro subset
non_topmed_AC_eas Integer Alternate allele count for samples of East Asian ancestry in the non_topmed subset
non_topmed_AN_eas Integer Total number of alleles in samples of East Asian ancestry in the non_topmed subset
non_topmed_AF_eas Float Alternate allele frequency in samples of East Asian ancestry in the non_topmed subset
non_topmed_nhomalt_eas Integer Count of homozygous individuals in samples of East Asian ancestry in the non_topmed subset
non_topmed_AC_fin_male Integer Alternate allele count for male samples of Finnish ancestry in the non_topmed subset
non_topmed_AN_fin_male Integer Total number of alleles in male samples of Finnish ancestry in the non_topmed subset
non_topmed_AF_fin_male Float Alternate allele frequency in male samples of Finnish ancestry in the non_topmed subset
non_topmed_nhomalt_fin_male Integer Count of homozygous individuals in male samples of Finnish ancestry in the non_topmed subset
non_cancer_AC_asj_male Integer Alternate allele count for male samples of Ashkenazi Jewish ancestry in the non_cancer subset
non_cancer_AN_asj_male Integer Total number of alleles in male samples of Ashkenazi Jewish ancestry in the non_cancer subset
non_cancer_AF_asj_male Float Alternate allele frequency in male samples of Ashkenazi Jewish ancestry in the non_cancer subset
non_cancer_nhomalt_asj_male Integer Count of homozygous individuals in male samples of Ashkenazi Jewish ancestry in the non_cancer subset
AC_fin Integer Alternate allele count for samples of Finnish ancestry
AN_fin Integer Total number of alleles in samples of Finnish ancestry
AF_fin Float Alternate allele frequency in samples of Finnish ancestry
nhomalt_fin Integer Count of homozygous individuals in samples of Finnish ancestry
AC_nfe_male Integer Alternate allele count for male samples of Non-Finnish European ancestry
AN_nfe_male Integer Total number of alleles in male samples of Non-Finnish European ancestry
AF_nfe_male Float Alternate allele frequency in male samples of Non-Finnish European ancestry
nhomalt_nfe_male Integer Count of homozygous individuals in male samples of Non-Finnish European ancestry
non_topmed_AC_eas_kor Integer Alternate allele count for samples of Korean ancestry in the non_topmed subset
non_topmed_AN_eas_kor Integer Total number of alleles in samples of Korean ancestry in the non_topmed subset
non_topmed_AF_eas_kor Float Alternate allele frequency in samples of Korean ancestry in the non_topmed subset
non_topmed_nhomalt_eas_kor Integer Count of homozygous individuals in samples of Korean ancestry in the non_topmed subset
controls_AC_amr_male Integer Alternate allele count for male samples of Latino ancestry in the controls subset
controls_AN_amr_male Integer Total number of alleles in male samples of Latino ancestry in the controls subset
controls_AF_amr_male Float Alternate allele frequency in male samples of Latino ancestry in the controls subset
controls_nhomalt_amr_male Integer Count of homozygous individuals in male samples of Latino ancestry in the controls subset
non_neuro_AC_eas_oea Integer Alternate allele count for samples of Other East Asian ancestry in the non_neuro subset
non_neuro_AN_eas_oea Integer Total number of alleles in samples of Other East Asian ancestry in the non_neuro subset
non_neuro_AF_eas_oea Float Alternate allele frequency in samples of Other East Asian ancestry in the non_neuro subset
non_neuro_nhomalt_eas_oea Integer Count of homozygous individuals in samples of Other East Asian ancestry in the non_neuro subset
AC_sas_female Integer Alternate allele count for female samples of South Asian ancestry
AN_sas_female Integer Total number of alleles in female samples of South Asian ancestry
AF_sas_female Float Alternate allele frequency in female samples of South Asian ancestry
nhomalt_sas_female Integer Count of homozygous individuals in female samples of South Asian ancestry
controls_AC_afr_female Integer Alternate allele count for female samples of African-American/African ancestry in the controls subset
controls_AN_afr_female Integer Total number of alleles in female samples of African-American/African ancestry in the controls subset
controls_AF_afr_female Float Alternate allele frequency in female samples of African-American/African ancestry in the controls subset
controls_nhomalt_afr_female Integer Count of homozygous individuals in female samples of African-American/African ancestry in the controls subset
controls_AC_amr Integer Alternate allele count for samples of Latino ancestry in the controls subset
controls_AN_amr Integer Total number of alleles in samples of Latino ancestry in the controls subset
controls_AF_amr Float Alternate allele frequency in samples of Latino ancestry in the controls subset
controls_nhomalt_amr Integer Count of homozygous individuals in samples of Latino ancestry in the controls subset
non_topmed_AC_eas_jpn Integer Alternate allele count for samples of Japanese ancestry in the non_topmed subset
non_topmed_AN_eas_jpn Integer Total number of alleles in samples of Japanese ancestry in the non_topmed subset
non_topmed_AF_eas_jpn Float Alternate allele frequency in samples of Japanese ancestry in the non_topmed subset
non_topmed_nhomalt_eas_jpn Integer Count of homozygous individuals in samples of Japanese ancestry in the non_topmed subset
AC_asj_female Integer Alternate allele count for female samples of Ashkenazi Jewish ancestry
AN_asj_female Integer Total number of alleles in female samples of Ashkenazi Jewish ancestry
AF_asj_female Float Alternate allele frequency in female samples of Ashkenazi Jewish ancestry
nhomalt_asj_female Integer Count of homozygous individuals in female samples of Ashkenazi Jewish ancestry
non_topmed_AC_nfe_bgr Integer Alternate allele count for samples of Bulgarian (Eastern European) ancestry in the non_topmed subset
non_topmed_AN_nfe_bgr Integer Total number of alleles in samples of Bulgarian (Eastern European) ancestry in the non_topmed subset
non_topmed_AF_nfe_bgr Float Alternate allele frequency in samples of Bulgarian (Eastern European) ancestry in the non_topmed subset
non_topmed_nhomalt_nfe_bgr Integer Count of homozygous individuals in samples of Bulgarian (Eastern European) ancestry in the non_topmed subset
non_cancer_AC_nfe_est Integer Alternate allele count for samples of Estonian ancestry in the non_cancer subset
non_cancer_AN_nfe_est Integer Total number of alleles in samples of Estonian ancestry in the non_cancer subset
non_cancer_AF_nfe_est Float Alternate allele frequency in samples of Estonian ancestry in the non_cancer subset
non_cancer_nhomalt_nfe_est Integer Count of homozygous individuals in samples of Estonian ancestry in the non_cancer subset
non_neuro_AC_eas Integer Alternate allele count for samples of East Asian ancestry in the non_neuro subset
non_neuro_AN_eas Integer Total number of alleles in samples of East Asian ancestry in the non_neuro subset
non_neuro_AF_eas Float Alternate allele frequency in samples of East Asian ancestry in the non_neuro subset
non_neuro_nhomalt_eas Integer Count of homozygous individuals in samples of East Asian ancestry in the non_neuro subset
non_cancer_AC_nfe Integer Alternate allele count for samples of Non-Finnish European ancestry in the non_cancer subset
non_cancer_AN_nfe Integer Total number of alleles in samples of Non-Finnish European ancestry in the non_cancer subset
non_cancer_AF_nfe Float Alternate allele frequency in samples of Non-Finnish European ancestry in the non_cancer subset
non_cancer_nhomalt_nfe Integer Count of homozygous individuals in samples of Non-Finnish European ancestry in the non_cancer subset
non_neuro_AC_male Integer Alternate allele count for male samples in the non_neuro subset
non_neuro_AN_male Integer Total number of alleles in male samples in the non_neuro subset
non_neuro_AF_male Float Alternate allele frequency in male samples in the non_neuro subset
non_neuro_nhomalt_male Integer Count of homozygous individuals in male samples in the non_neuro subset
non_neuro_AC_sas_female Integer Alternate allele count for female samples of South Asian ancestry in the non_neuro subset
non_neuro_AN_sas_female Integer Total number of alleles in female samples of South Asian ancestry in the non_neuro subset
non_neuro_AF_sas_female Float Alternate allele frequency in female samples of South Asian ancestry in the non_neuro subset
non_neuro_nhomalt_sas_female Integer Count of homozygous individuals in female samples of South Asian ancestry in the non_neuro subset
AC_asj Integer Alternate allele count for samples of Ashkenazi Jewish ancestry
AN_asj Integer Total number of alleles in samples of Ashkenazi Jewish ancestry
AF_asj Float Alternate allele frequency in samples of Ashkenazi Jewish ancestry
nhomalt_asj Integer Count of homozygous individuals in samples of Ashkenazi Jewish ancestry
controls_AC_nfe_est Integer Alternate allele count for samples of Estonian ancestry in the controls subset
controls_AN_nfe_est Integer Total number of alleles in samples of Estonian ancestry in the controls subset
controls_AF_nfe_est Float Alternate allele frequency in samples of Estonian ancestry in the controls subset
controls_nhomalt_nfe_est Integer Count of homozygous individuals in samples of Estonian ancestry in the controls subset
non_topmed_AC_asj_female Integer Alternate allele count for female samples of Ashkenazi Jewish ancestry in the non_topmed subset
non_topmed_AN_asj_female Integer Total number of alleles in female samples of Ashkenazi Jewish ancestry in the non_topmed subset
non_topmed_AF_asj_female Float Alternate allele frequency in female samples of Ashkenazi Jewish ancestry in the non_topmed subset
non_topmed_nhomalt_asj_female Integer Count of homozygous individuals in female samples of Ashkenazi Jewish ancestry in the non_topmed subset
non_cancer_AC_nfe_swe Integer Alternate allele count for samples of Swedish ancestry in the non_cancer subset
non_cancer_AN_nfe_swe Integer Total number of alleles in samples of Swedish ancestry in the non_cancer subset
non_cancer_AF_nfe_swe Float Alternate allele frequency in samples of Swedish ancestry in the non_cancer subset
non_cancer_nhomalt_nfe_swe Integer Count of homozygous individuals in samples of Swedish ancestry in the non_cancer subset
non_cancer_AC Integer Alternate allele count for samples in the non_cancer subset
non_cancer_AN Integer Total number of alleles in samples in the non_cancer subset
non_cancer_AF Float Alternate allele frequency in samples in the non_cancer subset
non_cancer_nhomalt Integer Count of homozygous individuals in samples in the non_cancer subset
non_topmed_AC_oth Integer Alternate allele count for samples of Other ancestry in the non_topmed subset
non_topmed_AN_oth Integer Total number of alleles in samples of Other ancestry in the non_topmed subset
non_topmed_AF_oth Float Alternate allele frequency in samples of Other ancestry in the non_topmed subset
non_topmed_nhomalt_oth Integer Count of homozygous individuals in samples of Other ancestry in the non_topmed subset
non_topmed_AC_fin_female Integer Alternate allele count for female samples of Finnish ancestry in the non_topmed subset
non_topmed_AN_fin_female Integer Total number of alleles in female samples of Finnish ancestry in the non_topmed subset
non_topmed_AF_fin_female Float Alternate allele frequency in female samples of Finnish ancestry in the non_topmed subset
non_topmed_nhomalt_fin_female Integer Count of homozygous individuals in female samples of Finnish ancestry in the non_topmed subset
non_cancer_AC_fin_female Integer Alternate allele count for female samples of Finnish ancestry in the non_cancer subset
non_cancer_AN_fin_female Integer Total number of alleles in female samples of Finnish ancestry in the non_cancer subset
non_cancer_AF_fin_female Float Alternate allele frequency in female samples of Finnish ancestry in the non_cancer subset
non_cancer_nhomalt_fin_female Integer Count of homozygous individuals in female samples of Finnish ancestry in the non_cancer subset
AC_oth Integer Alternate allele count for samples of Other ancestry
AN_oth Integer Total number of alleles in samples of Other ancestry
AF_oth Float Alternate allele frequency in samples of Other ancestry
nhomalt_oth Integer Count of homozygous individuals in samples of Other ancestry
non_neuro_AC_nfe_male Integer Alternate allele count for male samples of Non-Finnish European ancestry in the non_neuro subset
non_neuro_AN_nfe_male Integer Total number of alleles in male samples of Non-Finnish European ancestry in the non_neuro subset
non_neuro_AF_nfe_male Float Alternate allele frequency in male samples of Non-Finnish European ancestry in the non_neuro subset
non_neuro_nhomalt_nfe_male Integer Count of homozygous individuals in male samples of Non-Finnish European ancestry in the non_neuro subset
controls_AC_female Integer Alternate allele count for female samples in the controls subset
controls_AN_female Integer Total number of alleles in female samples in the controls subset
controls_AF_female Float Alternate allele frequency in female samples in the controls subset
controls_nhomalt_female Integer Count of homozygous individuals in female samples in the controls subset
non_cancer_AC_fin Integer Alternate allele count for samples of Finnish ancestry in the non_cancer subset
non_cancer_AN_fin Integer Total number of alleles in samples of Finnish ancestry in the non_cancer subset
non_cancer_AF_fin Float Alternate allele frequency in samples of Finnish ancestry in the non_cancer subset
non_cancer_nhomalt_fin Integer Count of homozygous individuals in samples of Finnish ancestry in the non_cancer subset
non_topmed_AC_fin Integer Alternate allele count for samples of Finnish ancestry in the non_topmed subset
non_topmed_AN_fin Integer Total number of alleles in samples of Finnish ancestry in the non_topmed subset
non_topmed_AF_fin Float Alternate allele frequency in samples of Finnish ancestry in the non_topmed subset
non_topmed_nhomalt_fin Integer Count of homozygous individuals in samples of Finnish ancestry in the non_topmed subset
non_cancer_AC_eas_oea Integer Alternate allele count for samples of Other East Asian ancestry in the non_cancer subset
non_cancer_AN_eas_oea Integer Total number of alleles in samples of Other East Asian ancestry in the non_cancer subset
non_cancer_AF_eas_oea Float Alternate allele frequency in samples of Other East Asian ancestry in the non_cancer subset
non_cancer_nhomalt_eas_oea Integer Count of homozygous individuals in samples of Other East Asian ancestry in the non_cancer subset
non_topmed_AC_nfe_female Integer Alternate allele count for female samples of Non-Finnish European ancestry in the non_topmed subset
non_topmed_AN_nfe_female Integer Total number of alleles in female samples of Non-Finnish European ancestry in the non_topmed subset
non_topmed_AF_nfe_female Float Alternate allele frequency in female samples of Non-Finnish European ancestry in the non_topmed subset
non_topmed_nhomalt_nfe_female Integer Count of homozygous individuals in female samples of Non-Finnish European ancestry in the non_topmed subset
non_cancer_AC_sas_male Integer Alternate allele count for male samples of South Asian ancestry in the non_cancer subset
non_cancer_AN_sas_male Integer Total number of alleles in male samples of South Asian ancestry in the non_cancer subset
non_cancer_AF_sas_male Float Alternate allele frequency in male samples of South Asian ancestry in the non_cancer subset
non_cancer_nhomalt_sas_male Integer Count of homozygous individuals in male samples of South Asian ancestry in the non_cancer subset
controls_AC_asj_male Integer Alternate allele count for male samples of Ashkenazi Jewish ancestry in the controls subset
controls_AN_asj_male Integer Total number of alleles in male samples of Ashkenazi Jewish ancestry in the controls subset
controls_AF_asj_male Float Alternate allele frequency in male samples of Ashkenazi Jewish ancestry in the controls subset
controls_nhomalt_asj_male Integer Count of homozygous individuals in male samples of Ashkenazi Jewish ancestry in the controls subset
non_cancer_AC_raw Integer Alternate allele count for samples in the non_cancer subset
non_cancer_AN_raw Integer Total number of alleles in samples in the non_cancer subset
non_cancer_AF_raw Float Alternate allele frequency in samples in the non_cancer subset
non_cancer_nhomalt_raw Integer Count of homozygous individuals in samples in the non_cancer subset
non_cancer_AC_eas_male Integer Alternate allele count for male samples of East Asian ancestry in the non_cancer subset
non_cancer_AN_eas_male Integer Total number of alleles in male samples of East Asian ancestry in the non_cancer subset
non_cancer_AF_eas_male Float Alternate allele frequency in male samples of East Asian ancestry in the non_cancer subset
non_cancer_nhomalt_eas_male Integer Count of homozygous individuals in male samples of East Asian ancestry in the non_cancer subset
non_topmed_AC_asj_male Integer Alternate allele count for male samples of Ashkenazi Jewish ancestry in the non_topmed subset
non_topmed_AN_asj_male Integer Total number of alleles in male samples of Ashkenazi Jewish ancestry in the non_topmed subset
non_topmed_AF_asj_male Float Alternate allele frequency in male samples of Ashkenazi Jewish ancestry in the non_topmed subset
non_topmed_nhomalt_asj_male Integer Count of homozygous individuals in male samples of Ashkenazi Jewish ancestry in the non_topmed subset
non_neuro_AC_oth Integer Alternate allele count for samples of Other ancestry in the non_neuro subset
non_neuro_AN_oth Integer Total number of alleles in samples of Other ancestry in the non_neuro subset
non_neuro_AF_oth Float Alternate allele frequency in samples of Other ancestry in the non_neuro subset
non_neuro_nhomalt_oth Integer Count of homozygous individuals in samples of Other ancestry in the non_neuro subset
AC_male Integer Alternate allele count for male samples
AN_male Integer Total number of alleles in male samples
AF_male Float Alternate allele frequency in male samples
nhomalt_male Integer Count of homozygous individuals in male samples
controls_AC_fin_female Integer Alternate allele count for female samples of Finnish ancestry in the controls subset
controls_AN_fin_female Integer Total number of alleles in female samples of Finnish ancestry in the controls subset
controls_AF_fin_female Float Alternate allele frequency in female samples of Finnish ancestry in the controls subset
controls_nhomalt_fin_female Integer Count of homozygous individuals in female samples of Finnish ancestry in the controls subset
controls_AC_nfe_bgr Integer Alternate allele count for samples of Bulgarian (Eastern European) ancestry in the controls subset
controls_AN_nfe_bgr Integer Total number of alleles in samples of Bulgarian (Eastern European) ancestry in the controls subset
controls_AF_nfe_bgr Float Alternate allele frequency in samples of Bulgarian (Eastern European) ancestry in the controls subset
controls_nhomalt_nfe_bgr Integer Count of homozygous individuals in samples of Bulgarian (Eastern European) ancestry in the controls subset
controls_AC_asj_female Integer Alternate allele count for female samples of Ashkenazi Jewish ancestry in the controls subset
controls_AN_asj_female Integer Total number of alleles in female samples of Ashkenazi Jewish ancestry in the controls subset
controls_AF_asj_female Float Alternate allele frequency in female samples of Ashkenazi Jewish ancestry in the controls subset
controls_nhomalt_asj_female Integer Count of homozygous individuals in female samples of Ashkenazi Jewish ancestry in the controls subset
AC_amr_male Integer Alternate allele count for male samples of Latino ancestry
AN_amr_male Integer Total number of alleles in male samples of Latino ancestry
AF_amr_male Float Alternate allele frequency in male samples of Latino ancestry
nhomalt_amr_male Integer Count of homozygous individuals in male samples of Latino ancestry
AC_amr_female Integer Alternate allele count for female samples of Latino ancestry
AN_amr_female Integer Total number of alleles in female samples of Latino ancestry
AF_amr_female Float Alternate allele frequency in female samples of Latino ancestry
nhomalt_amr_female Integer Count of homozygous individuals in female samples of Latino ancestry
non_topmed_AC_sas_male Integer Alternate allele count for male samples of South Asian ancestry in the non_topmed subset
non_topmed_AN_sas_male Integer Total number of alleles in male samples of South Asian ancestry in the non_topmed subset
non_topmed_AF_sas_male Float Alternate allele frequency in male samples of South Asian ancestry in the non_topmed subset
non_topmed_nhomalt_sas_male Integer Count of homozygous individuals in male samples of South Asian ancestry in the non_topmed subset
AC_oth_male Integer Alternate allele count for male samples of Other ancestry
AN_oth_male Integer Total number of alleles in male samples of Other ancestry
AF_oth_male Float Alternate allele frequency in male samples of Other ancestry
nhomalt_oth_male Integer Count of homozygous individuals in male samples of Other ancestry
non_cancer_AC_sas Integer Alternate allele count for samples of South Asian ancestry in the non_cancer subset
non_cancer_AN_sas Integer Total number of alleles in samples of South Asian ancestry in the non_cancer subset
non_cancer_AF_sas Float Alternate allele frequency in samples of South Asian ancestry in the non_cancer subset
non_cancer_nhomalt_sas Integer Count of homozygous individuals in samples of South Asian ancestry in the non_cancer subset
non_neuro_AC_nfe_seu Integer Alternate allele count for samples of Southern European ancestry in the non_neuro subset
non_neuro_AN_nfe_seu Integer Total number of alleles in samples of Southern European ancestry in the non_neuro subset
non_neuro_AF_nfe_seu Float Alternate allele frequency in samples of Southern European ancestry in the non_neuro subset
non_neuro_nhomalt_nfe_seu Integer Count of homozygous individuals in samples of Southern European ancestry in the non_neuro subset
non_cancer_AC_eas_kor Integer Alternate allele count for samples of Korean ancestry in the non_cancer subset
non_cancer_AN_eas_kor Integer Total number of alleles in samples of Korean ancestry in the non_cancer subset
non_cancer_AF_eas_kor Float Alternate allele frequency in samples of Korean ancestry in the non_cancer subset
non_cancer_nhomalt_eas_kor Integer Count of homozygous individuals in samples of Korean ancestry in the non_cancer subset
non_topmed_AC_afr_female Integer Alternate allele count for female samples of African-American/African ancestry in the non_topmed subset
non_topmed_AN_afr_female Integer Total number of alleles in female samples of African-American/African ancestry in the non_topmed subset
non_topmed_AF_afr_female Float Alternate allele frequency in female samples of African-American/African ancestry in the non_topmed subset
non_topmed_nhomalt_afr_female Integer Count of homozygous individuals in female samples of African-American/African ancestry in the non_topmed subset
controls_AC_sas_male Integer Alternate allele count for male samples of South Asian ancestry in the controls subset
controls_AN_sas_male Integer Total number of alleles in male samples of South Asian ancestry in the controls subset
controls_AF_sas_male Float Alternate allele frequency in male samples of South Asian ancestry in the controls subset
controls_nhomalt_sas_male Integer Count of homozygous individuals in male samples of South Asian ancestry in the controls subset
non_topmed_AC_sas_female Integer Alternate allele count for female samples of South Asian ancestry in the non_topmed subset
non_topmed_AN_sas_female Integer Total number of alleles in female samples of South Asian ancestry in the non_topmed subset
non_topmed_AF_sas_female Float Alternate allele frequency in female samples of South Asian ancestry in the non_topmed subset
non_topmed_nhomalt_sas_female Integer Count of homozygous individuals in female samples of South Asian ancestry in the non_topmed subset
non_topmed_AC_afr Integer Alternate allele count for samples of African-American/African ancestry in the non_topmed subset
non_topmed_AN_afr Integer Total number of alleles in samples of African-American/African ancestry in the non_topmed subset
non_topmed_AF_afr Float Alternate allele frequency in samples of African-American/African ancestry in the non_topmed subset
non_topmed_nhomalt_afr Integer Count of homozygous individuals in samples of African-American/African ancestry in the non_topmed subset
controls_AC Integer Alternate allele count for samples in the controls subset
controls_AN Integer Total number of alleles in samples in the controls subset
controls_AF Float Alternate allele frequency in samples in the controls subset
controls_nhomalt Integer Count of homozygous individuals in samples in the controls subset
non_neuro_AC_oth_female Integer Alternate allele count for female samples of Other ancestry in the non_neuro subset
non_neuro_AN_oth_female Integer Total number of alleles in female samples of Other ancestry in the non_neuro subset
non_neuro_AF_oth_female Float Alternate allele frequency in female samples of Other ancestry in the non_neuro subset
non_neuro_nhomalt_oth_female Integer Count of homozygous individuals in female samples of Other ancestry in the non_neuro subset
non_topmed_faf95_amr Float Filtering allele frequency (using Poisson 95% CI) for samples of Latino ancestry in the non_topmed subset
non_topmed_faf99_amr Float Filtering allele frequency (using Poisson 99% CI) for samples of Latino ancestry in the non_topmed subset
faf95_afr Float Filtering allele frequency (using Poisson 95% CI) for samples of African-American/African ancestry
faf99_afr Float Filtering allele frequency (using Poisson 99% CI) for samples of African-American/African ancestry
faf95_sas Float Filtering allele frequency (using Poisson 95% CI) for samples of South Asian ancestry
faf99_sas Float Filtering allele frequency (using Poisson 99% CI) for samples of South Asian ancestry
controls_faf95_afr Float Filtering allele frequency (using Poisson 95% CI) for samples of African-American/African ancestry in the controls subset
controls_faf99_afr Float Filtering allele frequency (using Poisson 99% CI) for samples of African-American/African ancestry in the controls subset
faf95_amr Float Filtering allele frequency (using Poisson 95% CI) for samples of Latino ancestry
faf99_amr Float Filtering allele frequency (using Poisson 99% CI) for samples of Latino ancestry
non_neuro_faf95_sas Float Filtering allele frequency (using Poisson 95% CI) for samples of South Asian ancestry in the non_neuro subset
non_neuro_faf99_sas Float Filtering allele frequency (using Poisson 99% CI) for samples of South Asian ancestry in the non_neuro subset
faf95_eas Float Filtering allele frequency (using Poisson 95% CI) for samples of East Asian ancestry
faf99_eas Float Filtering allele frequency (using Poisson 99% CI) for samples of East Asian ancestry
faf95 Float Filtering allele frequency (using Poisson 95% CI) for samples
faf99 Float Filtering allele frequency (using Poisson 99% CI) for samples
non_neuro_faf95_afr Float Filtering allele frequency (using Poisson 95% CI) for samples of African-American/African ancestry in the non_neuro subset
non_neuro_faf99_afr Float Filtering allele frequency (using Poisson 99% CI) for samples of African-American/African ancestry in the non_neuro subset
non_cancer_faf95_eas Float Filtering allele frequency (using Poisson 95% CI) for samples of East Asian ancestry in the non_cancer subset
non_cancer_faf99_eas Float Filtering allele frequency (using Poisson 99% CI) for samples of East Asian ancestry in the non_cancer subset
non_neuro_faf95_amr Float Filtering allele frequency (using Poisson 95% CI) for samples of Latino ancestry in the non_neuro subset
non_neuro_faf99_amr Float Filtering allele frequency (using Poisson 99% CI) for samples of Latino ancestry in the non_neuro subset
non_topmed_faf95_sas Float Filtering allele frequency (using Poisson 95% CI) for samples of South Asian ancestry in the non_topmed subset
non_topmed_faf99_sas Float Filtering allele frequency (using Poisson 99% CI) for samples of South Asian ancestry in the non_topmed subset
controls_faf95_nfe Float Filtering allele frequency (using Poisson 95% CI) for samples of Non-Finnish European ancestry in the controls subset
controls_faf99_nfe Float Filtering allele frequency (using Poisson 99% CI) for samples of Non-Finnish European ancestry in the controls subset
non_cancer_faf95_afr Float Filtering allele frequency (using Poisson 95% CI) for samples of African-American/African ancestry in the non_cancer subset
non_cancer_faf99_afr Float Filtering allele frequency (using Poisson 99% CI) for samples of African-American/African ancestry in the non_cancer subset
non_cancer_faf95_amr Float Filtering allele frequency (using Poisson 95% CI) for samples of Latino ancestry in the non_cancer subset
non_cancer_faf99_amr Float Filtering allele frequency (using Poisson 99% CI) for samples of Latino ancestry in the non_cancer subset
non_topmed_faf95 Float Filtering allele frequency (using Poisson 95% CI) for samples in the non_topmed subset
non_topmed_faf99 Float Filtering allele frequency (using Poisson 99% CI) for samples in the non_topmed subset
non_neuro_faf95_nfe Float Filtering allele frequency (using Poisson 95% CI) for samples of Non-Finnish European ancestry in the non_neuro subset
non_neuro_faf99_nfe Float Filtering allele frequency (using Poisson 99% CI) for samples of Non-Finnish European ancestry in the non_neuro subset
non_neuro_faf95 Float Filtering allele frequency (using Poisson 95% CI) for samples in the non_neuro subset
non_neuro_faf99 Float Filtering allele frequency (using Poisson 99% CI) for samples in the non_neuro subset
non_topmed_faf95_nfe Float Filtering allele frequency (using Poisson 95% CI) for samples of Non-Finnish European ancestry in the non_topmed subset
non_topmed_faf99_nfe Float Filtering allele frequency (using Poisson 99% CI) for samples of Non-Finnish European ancestry in the non_topmed subset
controls_faf95_eas Float Filtering allele frequency (using Poisson 95% CI) for samples of East Asian ancestry in the controls subset
controls_faf99_eas Float Filtering allele frequency (using Poisson 99% CI) for samples of East Asian ancestry in the controls subset
controls_faf95_sas Float Filtering allele frequency (using Poisson 95% CI) for samples of South Asian ancestry in the controls subset
controls_faf99_sas Float Filtering allele frequency (using Poisson 99% CI) for samples of South Asian ancestry in the controls subset
faf95_nfe Float Filtering allele frequency (using Poisson 95% CI) for samples of Non-Finnish European ancestry
faf99_nfe Float Filtering allele frequency (using Poisson 99% CI) for samples of Non-Finnish European ancestry
non_topmed_faf95_eas Float Filtering allele frequency (using Poisson 95% CI) for samples of East Asian ancestry in the non_topmed subset
non_topmed_faf99_eas Float Filtering allele frequency (using Poisson 99% CI) for samples of East Asian ancestry in the non_topmed subset
controls_faf95_amr Float Filtering allele frequency (using Poisson 95% CI) for samples of Latino ancestry in the controls subset
controls_faf99_amr Float Filtering allele frequency (using Poisson 99% CI) for samples of Latino ancestry in the controls subset
non_neuro_faf95_eas Float Filtering allele frequency (using Poisson 95% CI) for samples of East Asian ancestry in the non_neuro subset
non_neuro_faf99_eas Float Filtering allele frequency (using Poisson 99% CI) for samples of East Asian ancestry in the non_neuro subset
non_cancer_faf95_nfe Float Filtering allele frequency (using Poisson 95% CI) for samples of Non-Finnish European ancestry in the non_cancer subset
non_cancer_faf99_nfe Float Filtering allele frequency (using Poisson 99% CI) for samples of Non-Finnish European ancestry in the non_cancer subset
non_cancer_faf95 Float Filtering allele frequency (using Poisson 95% CI) for samples in the non_cancer subset
non_cancer_faf99 Float Filtering allele frequency (using Poisson 99% CI) for samples in the non_cancer subset
non_cancer_faf95_sas Float Filtering allele frequency (using Poisson 95% CI) for samples of South Asian ancestry in the non_cancer subset
non_cancer_faf99_sas Float Filtering allele frequency (using Poisson 99% CI) for samples of South Asian ancestry in the non_cancer subset
non_topmed_faf95_afr Float Filtering allele frequency (using Poisson 95% CI) for samples of African-American/African ancestry in the non_topmed subset
non_topmed_faf99_afr Float Filtering allele frequency (using Poisson 99% CI) for samples of African-American/African ancestry in the non_topmed subset
controls_faf95 Float Filtering allele frequency (using Poisson 95% CI) for samples in the controls subset
controls_faf99 Float Filtering allele frequency (using Poisson 99% CI) for samples in the controls subset
popmax String Population with maximum AF
AC_popmax Integer Allele count in the population with the maximum AF
AN_popmax Integer Total number of alleles in the population with the maximum AF
AF_popmax Float Maximum allele frequency across populations (excluding samples of Ashkenazi
nhomalt_popmax Integer Count of homozygous individuals in the population with the maximum allele frequency
age_hist_het_bin_freq String Histogram of ages of heterozygous individuals; bin edges are: 30.0
age_hist_het_n_smaller Integer Count of age values falling below lowest histogram bin edge for heterozygous individuals
age_hist_het_n_larger Integer Count of age values falling above highest histogram bin edge for heterozygous individuals
age_hist_hom_bin_freq String Histogram of ages of homozygous alternate individuals; bin edges are: 30.0
age_hist_hom_n_smaller Integer Count of age values falling below lowest histogram bin edge for homozygous alternate individuals
age_hist_hom_n_larger Integer Count of age values falling above highest histogram bin edge for homozygous alternate individuals
non_topmed_popmax String Population with maximum AF in the non_topmed subset
non_topmed_AC_popmax Integer Allele count in the population with the maximum AF in the non_topmed subset
non_topmed_AN_popmax Integer Total number of alleles in the population with the maximum AF in the non_topmed subset
non_topmed_AF_popmax Float Maximum allele frequency across populations (excluding samples of Ashkenazi
non_topmed_nhomalt_popmax Integer Count of homozygous individuals in the population with the maximum allele frequency in the non_topmed subset
non_neuro_popmax String Population with maximum AF in the non_neuro subset
non_neuro_AC_popmax Integer Allele count in the population with the maximum AF in the non_neuro subset
non_neuro_AN_popmax Integer Total number of alleles in the population with the maximum AF in the non_neuro subset
non_neuro_AF_popmax Float Maximum allele frequency across populations (excluding samples of Ashkenazi
non_neuro_nhomalt_popmax Integer Count of homozygous individuals in the population with the maximum allele frequency in the non_neuro subset
non_cancer_popmax String Population with maximum AF in the non_cancer subset
non_cancer_AC_popmax Integer Allele count in the population with the maximum AF in the non_cancer subset
non_cancer_AN_popmax Integer Total number of alleles in the population with the maximum AF in the non_cancer subset
non_cancer_AF_popmax Float Maximum allele frequency across populations (excluding samples of Ashkenazi
non_cancer_nhomalt_popmax Integer Count of homozygous individuals in the population with the maximum allele frequency in the non_cancer subset
controls_popmax String Population with maximum AF in the controls subset
controls_AC_popmax Integer Allele count in the population with the maximum AF in the controls subset
controls_AN_popmax Integer Total number of alleles in the population with the maximum AF in the controls subset
controls_AF_popmax Float Maximum allele frequency across populations (excluding samples of Ashkenazi
controls_nhomalt_popmax Integer Count of homozygous individuals in the population with the maximum allele frequency in the controls subset

gnomADv3.1.1 Filters

Annotation Value Type Description
AC Integer Alternate allele count for samples
AN Integer Total number of alleles in samples
AF Float Alternate allele frequency in samples
variant_type String Variant type (snv, indel, multi-snv, multi-indel, or mixed)
n_alt_alleles Integer Total number of alternate alleles observed at variant locus
ReadPosRankSum Float Z-score from Wilcoxon rank sum test of alternate vs. reference read position bias
MQRankSum Float Z-score from Wilcoxon rank sum test of alternate vs. reference read mapping qualities
RAW_MQ Float (No description from gnomAD)
DP Integer Depth of informative coverage for each sample; reads with MQ=255 or with bad mates are filtered
MQ_DP Integer (No description from gnomAD)
VarDP Integer (No description from gnomAD)
MQ Float Root mean square of the mapping quality of reads across all samples
QD Float Variant call confidence normalized by depth of sample reads supporting a variant
FS Float Phred-scaled p-value of Fisher's exact test for strand bias
SB Integer (No description from gnomAD)
InbreedingCoeff Float Inbreeding coefficient as estimated from the genotype likelihoods per-sample when compared against the Hardy-Weinberg expectation
AS_VQSLOD Float Log-odds ratio of being a true variant versus being a false positive under the trained allele-specific VQSR Gaussian mixture model
culprit String Worst-performing annotation in the VQSR Gaussian mixture model
SOR Float Strand bias estimated by the symmetric odds ratio test
AC_asj_female Integer Alternate allele count for female samples of Ashkenazi Jewish ancestry
AN_asj_female Integer Total number of alleles in female samples of Ashkenazi Jewish ancestry
AF_asj_female Float Alternate allele frequency in female samples of Ashkenazi Jewish ancestry
nhomalt_asj_female Integer Count of homozygous individuals in female samples of Ashkenazi Jewish ancestry
AC_eas_female Integer Alternate allele count for female samples of East Asian ancestry
AN_eas_female Integer Total number of alleles in female samples of East Asian ancestry
AF_eas_female Float Alternate allele frequency in female samples of East Asian ancestry
nhomalt_eas_female Integer Count of homozygous individuals in female samples of East Asian ancestry
AC_afr_male Integer Alternate allele count for male samples of African-American/African ancestry
AN_afr_male Integer Total number of alleles in male samples of African-American/African ancestry
AF_afr_male Float Alternate allele frequency in male samples of African-American/African ancestry
nhomalt_afr_male Integer Count of homozygous individuals in male samples of African-American/African ancestry
AC_female Integer Alternate allele count for female samples
AN_female Integer Total number of alleles in female samples
AF_female Float Alternate allele frequency in female samples
nhomalt_female Integer Count of homozygous individuals in female samples
AC_fin_male Integer Alternate allele count for male samples of Finnish ancestry
AN_fin_male Integer Total number of alleles in male samples of Finnish ancestry
AF_fin_male Float Alternate allele frequency in male samples of Finnish ancestry
nhomalt_fin_male Integer Count of homozygous individuals in male samples of Finnish ancestry
AC_oth_female Integer Alternate allele count for female samples of Other ancestry
AN_oth_female Integer Total number of alleles in female samples of Other ancestry
AF_oth_female Float Alternate allele frequency in female samples of Other ancestry
nhomalt_oth_female Integer Count of homozygous individuals in female samples of Other ancestry
AC_ami Integer Alternate allele count for samples of Amish ancestry
AN_ami Integer Total number of alleles in samples of Amish ancestry
AF_ami Float Alternate allele frequency in samples of Amish ancestry
nhomalt_ami Integer Count of homozygous individuals in samples of Amish ancestry
AC_oth Integer Alternate allele count for samples of Other ancestry
AN_oth Integer Total number of alleles in samples of Other ancestry
AF_oth Float Alternate allele frequency in samples of Other ancestry
nhomalt_oth Integer Count of homozygous individuals in samples of Other ancestry
AC_male Integer Alternate allele count for male samples
AN_male Integer Total number of alleles in male samples
AF_male Float Alternate allele frequency in male samples
nhomalt_male Integer Count of homozygous individuals in male samples
AC_ami_female Integer Alternate allele count for female samples of Amish ancestry
AN_ami_female Integer Total number of alleles in female samples of Amish ancestry
AF_ami_female Float Alternate allele frequency in female samples of Amish ancestry
nhomalt_ami_female Integer Count of homozygous individuals in female samples of Amish ancestry
AC_afr Integer Alternate allele count for samples of African-American/African ancestry
AN_afr Integer Total number of alleles in samples of African-American/African ancestry
AF_afr Float Alternate allele frequency in samples of African-American/African ancestry
nhomalt_afr Integer Count of homozygous individuals in samples of African-American/African ancestry
AC_eas_male Integer Alternate allele count for male samples of East Asian ancestry
AN_eas_male Integer Total number of alleles in male samples of East Asian ancestry
AF_eas_male Float Alternate allele frequency in male samples of East Asian ancestry
nhomalt_eas_male Integer Count of homozygous individuals in male samples of East Asian ancestry
AC_sas Integer Alternate allele count for samples of South Asian ancestry
AN_sas Integer Total number of alleles in samples of South Asian ancestry
AF_sas Float Alternate allele frequency in samples of South Asian ancestry
nhomalt_sas Integer Count of homozygous individuals in samples of South Asian ancestry
AC_nfe_female Integer Alternate allele count for female samples of Non-Finnish European ancestry
AN_nfe_female Integer Total number of alleles in female samples of Non-Finnish European ancestry
AF_nfe_female Float Alternate allele frequency in female samples of Non-Finnish European ancestry
nhomalt_nfe_female Integer Count of homozygous individuals in female samples of Non-Finnish European ancestry
AC_asj_male Integer Alternate allele count for male samples of Ashkenazi Jewish ancestry
AN_asj_male Integer Total number of alleles in male samples of Ashkenazi Jewish ancestry
AF_asj_male Float Alternate allele frequency in male samples of Ashkenazi Jewish ancestry
nhomalt_asj_male Integer Count of homozygous individuals in male samples of Ashkenazi Jewish ancestry
AC_raw Integer Alternate allele count for samples
AN_raw Integer Total number of alleles in samples
AF_raw Float Alternate allele frequency in samples
nhomalt_raw Integer Count of homozygous individuals in samples
AC_oth_male Integer Alternate allele count for male samples of Other ancestry
AN_oth_male Integer Total number of alleles in male samples of Other ancestry
AF_oth_male Float Alternate allele frequency in male samples of Other ancestry
nhomalt_oth_male Integer Count of homozygous individuals in male samples of Other ancestry
AC_nfe_male Integer Alternate allele count for male samples of Non-Finnish European ancestry
AN_nfe_male Integer Total number of alleles in male samples of Non-Finnish European ancestry
AF_nfe_male Float Alternate allele frequency in male samples of Non-Finnish European ancestry
nhomalt_nfe_male Integer Count of homozygous individuals in male samples of Non-Finnish European ancestry
AC_asj Integer Alternate allele count for samples of Ashkenazi Jewish ancestry
AN_asj Integer Total number of alleles in samples of Ashkenazi Jewish ancestry
AF_asj Float Alternate allele frequency in samples of Ashkenazi Jewish ancestry
nhomalt_asj Integer Count of homozygous individuals in samples of Ashkenazi Jewish ancestry
AC_amr_male Integer Alternate allele count for male samples of Latino ancestry
AN_amr_male Integer Total number of alleles in male samples of Latino ancestry
AF_amr_male Float Alternate allele frequency in male samples of Latino ancestry
nhomalt_amr_male Integer Count of homozygous individuals in male samples of Latino ancestry
nhomalt Integer Count of homozygous individuals in samples
AC_amr_female Integer Alternate allele count for female samples of Latino ancestry
AN_amr_female Integer Total number of alleles in female samples of Latino ancestry
AF_amr_female Float Alternate allele frequency in female samples of Latino ancestry
nhomalt_amr_female Integer Count of homozygous individuals in female samples of Latino ancestry
AC_sas_female Integer Alternate allele count for female samples of South Asian ancestry
AN_sas_female Integer Total number of alleles in female samples of South Asian ancestry
AF_sas_female Float Alternate allele frequency in female samples of South Asian ancestry
nhomalt_sas_female Integer Count of homozygous individuals in female samples of South Asian ancestry
AC_fin Integer Alternate allele count for samples of Finnish ancestry
AN_fin Integer Total number of alleles in samples of Finnish ancestry
AF_fin Float Alternate allele frequency in samples of Finnish ancestry
nhomalt_fin Integer Count of homozygous individuals in samples of Finnish ancestry
AC_afr_female Integer Alternate allele count for female samples of African-American/African ancestry
AN_afr_female Integer Total number of alleles in female samples of African-American/African ancestry
AF_afr_female Float Alternate allele frequency in female samples of African-American/African ancestry
nhomalt_afr_female Integer Count of homozygous individuals in female samples of African-American/African ancestry
AC_sas_male Integer Alternate allele count for male samples of South Asian ancestry
AN_sas_male Integer Total number of alleles in male samples of South Asian ancestry
AF_sas_male Float Alternate allele frequency in male samples of South Asian ancestry
nhomalt_sas_male Integer Count of homozygous individuals in male samples of South Asian ancestry
AC_amr Integer Alternate allele count for samples of Latino ancestry
AN_amr Integer Total number of alleles in samples of Latino ancestry
AF_amr Float Alternate allele frequency in samples of Latino ancestry
nhomalt_amr Integer Count of homozygous individuals in samples of Latino ancestry
AC_nfe Integer Alternate allele count for samples of Non-Finnish European ancestry
AN_nfe Integer Total number of alleles in samples of Non-Finnish European ancestry
AF_nfe Float Alternate allele frequency in samples of Non-Finnish European ancestry
nhomalt_nfe Integer Count of homozygous individuals in samples of Non-Finnish European ancestry
AC_eas Integer Alternate allele count for samples of East Asian ancestry
AN_eas Integer Total number of alleles in samples of East Asian ancestry
AF_eas Float Alternate allele frequency in samples of East Asian ancestry
nhomalt_eas Integer Count of homozygous individuals in samples of East Asian ancestry
AC_ami_male Integer Alternate allele count for male samples of Amish ancestry
AN_ami_male Integer Total number of alleles in male samples of Amish ancestry
AF_ami_male Float Alternate allele frequency in male samples of Amish ancestry
nhomalt_ami_male Integer Count of homozygous individuals in male samples of Amish ancestry
AC_fin_female Integer Alternate allele count for female samples of Finnish ancestry
AN_fin_female Integer Total number of alleles in female samples of Finnish ancestry
AF_fin_female Float Alternate allele frequency in female samples of Finnish ancestry
nhomalt_fin_female Integer Count of homozygous individuals in female samples of Finnish ancestry
faf95_afr Float Filtering allele frequency (using Poisson 95% CI) for samples of African-American/African ancestry
faf99_afr Float Filtering allele frequency (using Poisson 99% CI) for samples of African-American/African ancestry
faf95_sas Float Filtering allele frequency (using Poisson 95% CI) for samples of South Asian ancestry
faf99_sas Float Filtering allele frequency (using Poisson 99% CI) for samples of South Asian ancestry
faf95_adj Float (No description from gnomAD)
faf99_adj Float (No description from gnomAD)
faf95_amr Float Filtering allele frequency (using Poisson 95% CI) for samples of Latino ancestry
faf99_amr Float Filtering allele frequency (using Poisson 99% CI) for samples of Latino ancestry
faf95_nfe Float Filtering allele frequency (using Poisson 95% CI) for samples of Non-Finnish European ancestry
faf99_nfe Float Filtering allele frequency (using Poisson 99% CI) for samples of Non-Finnish European ancestry
faf95_eas Float Filtering allele frequency (using Poisson 95% CI) for samples of East Asian ancestry
faf99_eas Float Filtering allele frequency (using Poisson 99% CI) for samples of East Asian ancestry