Package ca.corefacility.bioinformatics.irida.config.repository

Class IridaApiFilesystemRepositoryConfig

java.lang.Object

ca.corefacility.bioinformatics.irida.config.repository.IridaApiFilesystemRepositoryConfig

@Configuration
public class IridaApiFilesystemRepositoryConfig
extends java.lang.Object

Configuration for filesystem repositories in IRIDA

Constructor Summary

Constructors

Constructor	Description
IridaApiFilesystemRepositoryConfig()

Method Summary

Modifier and Type	Method	Description
java.nio.file.Path	assemblyFileBaseDirectory()
java.nio.file.Path	outputFileBaseDirectory()
java.nio.file.Path	referenceFileBaseDirectory()
FilesystemSupplementedRepositoryImpl.RelativePathTranslatorListener	relativePathTranslatorListener(java.nio.file.Path referenceFileBaseDirectory, java.nio.file.Path sequenceFileBaseDirectory, java.nio.file.Path outputFileBaseDirectory, java.nio.file.Path assemblyFileBaseDirectory)
java.nio.file.Path	sequenceFileBaseDirectory()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

IridaApiFilesystemRepositoryConfig

public IridaApiFilesystemRepositoryConfig()

Method Detail

relativePathTranslatorListener

@Bean
public FilesystemSupplementedRepositoryImpl.RelativePathTranslatorListener relativePathTranslatorListener(@Qualifier("referenceFileBaseDirectory")
                                                                                                          java.nio.file.Path referenceFileBaseDirectory,
                                                                                                          @Qualifier("sequenceFileBaseDirectory")
                                                                                                          java.nio.file.Path sequenceFileBaseDirectory,
                                                                                                          @Qualifier("outputFileBaseDirectory")
                                                                                                          java.nio.file.Path outputFileBaseDirectory,
                                                                                                          @Qualifier("assemblyFileBaseDirectory")
                                                                                                          java.nio.file.Path assemblyFileBaseDirectory)

referenceFileBaseDirectory

@Bean(name="referenceFileBaseDirectory")
public java.nio.file.Path referenceFileBaseDirectory()
                                              throws java.io.IOException

Throws:

java.io.IOException

sequenceFileBaseDirectory

@Bean(name="sequenceFileBaseDirectory")
public java.nio.file.Path sequenceFileBaseDirectory()
                                             throws java.io.IOException

Throws:

java.io.IOException

outputFileBaseDirectory

@Bean(name="outputFileBaseDirectory")
public java.nio.file.Path outputFileBaseDirectory()
                                           throws java.io.IOException

Throws:

java.io.IOException

assemblyFileBaseDirectory

@Bean(name="assemblyFileBaseDirectory")
public java.nio.file.Path assemblyFileBaseDirectory()
                                             throws java.io.IOException

Throws:

java.io.IOException