Package ca.corefacility.bioinformatics.irida.database.changesets

Class AutomatedSISTRUpdate

  • All Implemented Interfaces:
    liquibase.change.custom.CustomChange, liquibase.change.custom.CustomSqlChange
    public class AutomatedSISTRUpdate
extends java.lang.Object
implements liquibase.change.custom.CustomSqlChange
    Class to translate automated SISTR analyses into metadata entries for associated samples.

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      liquibase.statement.SqlStatement[] generateStatements​(liquibase.database.Database database)  
      java.lang.String getConfirmationMessage()  
      void setFileOpener​(liquibase.resource.ResourceAccessor resourceAccessor)  
      void setUp()  
      liquibase.exception.ValidationErrors validate​(liquibase.database.Database database)  

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    • Constructor Detail

      • AutomatedSISTRUpdate

        public AutomatedSISTRUpdate()

    • Method Detail

      • setFileOpener

        public void setFileOpener​(liquibase.resource.ResourceAccessor resourceAccessor)
        Specified by:
        setFileOpener in interface liquibase.change.custom.CustomChange

      • generateStatements

        public liquibase.statement.SqlStatement[] generateStatements​(liquibase.database.Database database)
                                                      throws liquibase.exception.CustomChangeException
        Specified by:
        generateStatements in interface liquibase.change.custom.CustomSqlChange
        Throws:
        liquibase.exception.CustomChangeException

      • getConfirmationMessage

        public java.lang.String getConfirmationMessage()
        Specified by:
        getConfirmationMessage in interface liquibase.change.custom.CustomChange

      • setUp

        public void setUp()
           throws liquibase.exception.SetupException
        Specified by:
        setUp in interface liquibase.change.custom.CustomChange
        Throws:
        liquibase.exception.SetupException

      • validate

        public liquibase.exception.ValidationErrors validate​(liquibase.database.Database database)
        Specified by:
        validate in interface liquibase.change.custom.CustomChange