Package ca.corefacility.bioinformatics.irida.model.assembly

Class UploadedAssembly

java.lang.Object

ca.corefacility.bioinformatics.irida.model.IridaRepresentationModel

ca.corefacility.bioinformatics.irida.model.assembly.GenomeAssembly

ca.corefacility.bioinformatics.irida.model.assembly.UploadedAssembly

All Implemented Interfaces:

IridaSequenceFile, IridaThing, Timestamped<java.lang.Long>, VersionedFileFields<java.lang.Long>

@Entity
public class UploadedAssembly
extends GenomeAssembly

A GenomeAssembly implementation that was uploaded by a user or service

Constructor Summary

Constructors

Modifier	Constructor	Description
protected	UploadedAssembly()
	UploadedAssembly(java.nio.file.Path file)

Method Summary

Modifier and Type	Method	Description
java.nio.file.Path	getFile()	Gets the assembly file.
java.lang.Long	getFileRevisionNumber()	Get the version of the instance.
RemoteStatus	getRemoteStatus()	Get the RemoteStatus for this object if it was read from a remote source
void	incrementFileRevisionNumber()	Internally modify the file revision number to something new.
void	setFile(java.nio.file.Path file)
void	setRemoteStatus(RemoteStatus remoteStatus)	Set the RemoteStatus for this object if it was read from a remote source

Methods inherited from class ca.corefacility.bioinformatics.irida.model.assembly.GenomeAssembly

addSampleGenomeAssemblyJoin, equals, getCreatedDate, getFileName, getFileSize, getFileSizeBytes, getId, getLabel, hashCode, setId

Methods inherited from class ca.corefacility.bioinformatics.irida.model.IridaRepresentationModel

add, add, getLink, getLinks, getSelfHref, hasLink, hasLinks, removeLinks, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface ca.corefacility.bioinformatics.irida.model.IridaThing

getIdentifier, setLabel

Constructor Detail

UploadedAssembly

protected UploadedAssembly()

UploadedAssembly

public UploadedAssembly(java.nio.file.Path file)

Method Detail

getFile

public java.nio.file.Path getFile()

Description copied from class: GenomeAssembly

Gets the assembly file.

Specified by:

getFile in interface IridaSequenceFile

Specified by:

getFile in class GenomeAssembly

Returns:

The assembly file.

setFile

public void setFile(java.nio.file.Path file)

getFileRevisionNumber

public java.lang.Long getFileRevisionNumber()

Description copied from interface: VersionedFileFields

Get the version of the instance.

Returns:

the version of the instance.

incrementFileRevisionNumber

public void incrementFileRevisionNumber()

Description copied from interface: VersionedFileFields

Internally modify the file revision number to something new.

getRemoteStatus

public RemoteStatus getRemoteStatus()

Description copied from class: IridaRepresentationModel

Get the RemoteStatus for this object if it was read from a remote source

Overrides:

getRemoteStatus in class IridaRepresentationModel

Returns:

a RemoteStatus

setRemoteStatus

public void setRemoteStatus(RemoteStatus remoteStatus)

Description copied from class: IridaRepresentationModel

Set the RemoteStatus for this object if it was read from a remote source

Overrides:

setRemoteStatus in class IridaRepresentationModel

Parameters:

remoteStatus - the RemoteStatus object