Package ca.corefacility.bioinformatics.irida.processing.impl

Class Summary

Class	Description
AutomatedAnalysisFileProcessor	File processor used to launch an automated analysis for uploaded data.
ChecksumFileProcessor	FileProcessor used to calculate a checksum using sha256 for uploaded SequenceFiles
CoverageFileProcessor	FileProcessor used to calculate coverage of a SequencingObject for a Projects
DefaultFileProcessingChain	Default implementation of FileProcessingChain.
FastqcFileProcessor	Executes FastQC on a SequenceFile and stores the report in the database.
GzipFileProcessor	Handle gzip-ed files (if necessary).