Package ca.corefacility.bioinformatics.irida.repositories.joins.sample

Interface SampleSequencingObjectJoinRepository

All Superinterfaces:

org.springframework.data.repository.CrudRepository<SampleSequencingObjectJoin,java.lang.Long>, IridaJpaRepository<SampleSequencingObjectJoin,java.lang.Long>, org.springframework.data.jpa.repository.JpaSpecificationExecutor<SampleSequencingObjectJoin>, org.springframework.data.repository.PagingAndSortingRepository<SampleSequencingObjectJoin,java.lang.Long>, org.springframework.data.repository.Repository<SampleSequencingObjectJoin,java.lang.Long>, org.springframework.data.repository.history.RevisionRepository<SampleSequencingObjectJoin,java.lang.Long,java.lang.Integer>

public interface SampleSequencingObjectJoinRepository
extends IridaJpaRepository<SampleSequencingObjectJoin,java.lang.Long>

Repository for storing and retrieving SampleSequencingObjectJoins

Method Summary

Modifier and Type	Method	Description
SampleSequencingObjectJoin	getSampleForSequencingObject(SequencingObject seqObject)	Get the SampleSequencingObjectJoin for a given SequencingObject
java.util.List<SampleSequencingObjectJoin>	getSequencesForSample(Sample sample)	Get the SequenceFiles associated with a sample
SampleSequencingObjectJoin	readObjectForSample(Sample sample, java.lang.Long sequenceId)	Read a SampleSequencingObjectJoin with the given Sample and SequencingObject by id

Methods inherited from interface org.springframework.data.repository.CrudRepository

count, delete, deleteAll, deleteAll, deleteAllById, deleteById, existsById, findAll, findAllById, findById, save, saveAll

Methods inherited from interface org.springframework.data.jpa.repository.JpaSpecificationExecutor

count, exists, findAll, findAll, findAll, findOne

Methods inherited from interface org.springframework.data.repository.PagingAndSortingRepository

findAll, findAll

Methods inherited from interface org.springframework.data.repository.history.RevisionRepository

findLastChangeRevision, findRevision, findRevisions, findRevisions

Method Detail

getSequencesForSample

@Query("select j from SampleSequencingObjectJoin j where j.sample = ?1")
java.util.List<SampleSequencingObjectJoin> getSequencesForSample(Sample sample)

Get the SequenceFiles associated with a sample

Parameters:

sample - The sample to get the files for

Returns:

a list of SampleSequencingObjectJoin objects

readObjectForSample

@Query("from SampleSequencingObjectJoin j where j.sample = ?1 and j.sequencingObject.id = ?2")
SampleSequencingObjectJoin readObjectForSample(Sample sample,
                                               java.lang.Long sequenceId)

Read a SampleSequencingObjectJoin with the given Sample and SequencingObject by id

Parameters:

sample - Sample to get the join for

sequenceId - ID of the SequencingObject to get the join for

Returns:

A SampleSequencingObjectJoin

getSampleForSequencingObject

@Query("from SampleSequencingObjectJoin j where j.sequencingObject = ?1")
SampleSequencingObjectJoin getSampleForSequencingObject(SequencingObject seqObject)

Get the SampleSequencingObjectJoin for a given SequencingObject

Parameters:

seqObject - the SequencingObject to get the join for

Returns:

a SampleSequencingObjectJoin