Package ca.corefacility.bioinformatics.irida.repositories.sample

Interface MetadataEntryRepository

All Superinterfaces:

org.springframework.data.repository.CrudRepository<MetadataEntry,java.lang.Long>, IridaJpaRepository<MetadataEntry,java.lang.Long>, org.springframework.data.jpa.repository.JpaSpecificationExecutor<MetadataEntry>, MetadataEntryRepositoryCustom, org.springframework.data.repository.PagingAndSortingRepository<MetadataEntry,java.lang.Long>, org.springframework.data.repository.Repository<MetadataEntry,java.lang.Long>, org.springframework.data.repository.history.RevisionRepository<MetadataEntry,java.lang.Long,java.lang.Integer>

public interface MetadataEntryRepository
extends IridaJpaRepository<MetadataEntry,java.lang.Long>, MetadataEntryRepositoryCustom

Repository for saving and reading MetadataEntry

Method Summary

Modifier and Type	Method	Description
java.lang.Long	getMetadataEntriesCountBySamplesAndField(MetadataTemplateField field, java.util.List<Sample> sampleList)	Get count of MetadataEntry related to the MetadataTemplateField in the list of Sample
MetadataEntry	getMetadataEntryById(java.lang.Long id)	Get the MetadataEntry by id
MetadataEntry	getMetadataEntryBySampleAndField(MetadataTemplateField field, Sample sample)	Get the MetadataEntry related to the MetadataTemplateField attached to the given Sample
java.util.Set<MetadataEntry>	getMetadataForSample(Sample sample)	Get all the MetadataEntry attached to the given Sample
java.util.Set<MetadataEntry>	getMetadataForSampleAndField(Sample sample, java.util.Collection<MetadataTemplateField> fields)	Get a set of MetadataEntry related to the MetadataTemplateField attached to the given Sample

Methods inherited from interface org.springframework.data.repository.CrudRepository

count, delete, deleteAll, deleteAll, deleteAllById, deleteById, existsById, findAll, findAllById, findById, save, saveAll

Methods inherited from interface org.springframework.data.jpa.repository.JpaSpecificationExecutor

count, exists, findAll, findAll, findAll, findOne

Methods inherited from interface ca.corefacility.bioinformatics.irida.repositories.sample.MetadataEntryRepositoryCustom

getMetadataForProjectSamples

Methods inherited from interface org.springframework.data.repository.PagingAndSortingRepository

findAll, findAll

Methods inherited from interface org.springframework.data.repository.history.RevisionRepository

findLastChangeRevision, findRevision, findRevisions, findRevisions

Method Detail

getMetadataForSample

@Query("FROM MetadataEntry m WHERE m.sample=?1")
java.util.Set<MetadataEntry> getMetadataForSample(Sample sample)

Get all the MetadataEntry attached to the given Sample

Parameters:

sample - the sample to get metadata for

Returns:

a set of MetadataEntry

getMetadataForSampleAndField

@Query("FROM MetadataEntry m WHERE m.sample=?1 AND m.field IN (?2)")
java.util.Set<MetadataEntry> getMetadataForSampleAndField(Sample sample,
                                                          java.util.Collection<MetadataTemplateField> fields)

Get a set of MetadataEntry related to the MetadataTemplateField attached to the given Sample

Parameters:

sample - the sample to get metadata for

fields - the fields to get on the sample

Returns:

a set of MetadataEntry

getMetadataEntryBySampleAndField

@Query("FROM MetadataEntry m WHERE m.field=?1 AND m.sample=?2")
MetadataEntry getMetadataEntryBySampleAndField(MetadataTemplateField field,
                                               Sample sample)

Get the MetadataEntry related to the MetadataTemplateField attached to the given Sample

Parameters:

field - the MetadataTemplateField for which to find entries

sample - the Sample for which to find entries

Returns:

a MetadataEntry

getMetadataEntryById

@Query("FROM MetadataEntry m WHERE m.id=?1")
MetadataEntry getMetadataEntryById(java.lang.Long id)

Get the MetadataEntry by id

Parameters:

id - the MetadataEntry identifier

Returns:

a MetadataEntry

getMetadataEntriesCountBySamplesAndField

@Query("SELECT COUNT(m.id) FROM MetadataEntry m WHERE m.field=?1 AND m.sample in (?2)")
java.lang.Long getMetadataEntriesCountBySamplesAndField(MetadataTemplateField field,
                                                        java.util.List<Sample> sampleList)

Get count of MetadataEntry related to the MetadataTemplateField in the list of Sample

Parameters:

field - the MetadataTemplateField for which to find entries

sampleList - the list of Sample for which to find entries

Returns:

a Long count of entries found for the field across the list of samples