Package ca.corefacility.bioinformatics.irida.ria.web

Class NCBIAjaxController

java.lang.Object

ca.corefacility.bioinformatics.irida.ria.web.NCBIAjaxController

@RestController
@RequestMapping("/ajax/ncbi")
public class NCBIAjaxController
extends java.lang.Object

Spring Ajax Controller to handle NCBI requests.

Constructor Summary

Constructors

Constructor	Description
NCBIAjaxController(UINcbiService service)

Method Summary

Modifier and Type	Method	Description
org.springframework.http.ResponseEntity<NcbiSubmissionModel>	getExportDetails(java.lang.Long projectId, java.lang.Long exportId)	Get the details of a specific NCBI SRA submission
org.springframework.http.ResponseEntity<TableResponse<NcbiExportSubmissionAdminTableModel>>	getNCBIExportsForAdmin(TableRequest request)	Get a paged list of NCBI Export Submission based on the current page information
org.springframework.http.ResponseEntity<java.util.List<NcbiExportSubmissionTableModel>>	getNCBIExportsForProject(java.lang.Long projectId)	Get a List of all NCBI Export Submissions on a Project
java.util.EnumMap<NcbiPlatform,java.util.List<java.lang.String>>	getNcbiPlatforms()	Get all the available NCBI Sequencing platforms.
java.util.List<java.lang.String>	getNcbiSelection()	Get a list of NCBI allowed Library selection techniques
java.util.List<java.lang.String>	getNcbiSources()	Get a list of NCBI Library Sources
java.util.List<java.lang.String>	getNcbiStrategies()	Get a list of NCBI allowed Library strategies
void	submitNcbiExport(NcbiSubmissionRequest submission)	Submit a NCBI SRA Submission

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

NCBIAjaxController

@Autowired
public NCBIAjaxController(UINcbiService service)

Method Detail

getNCBIExportsForProject

@RequestMapping("/project/{projectId}/list")
public org.springframework.http.ResponseEntity<java.util.List<NcbiExportSubmissionTableModel>> getNCBIExportsForProject(@PathVariable
                                                                                                                        java.lang.Long projectId)

Get a List of all NCBI Export Submissions on a Project

Parameters:

projectId - Identifier for a Project

Returns:

List of NcbiExportSubmissionAdminTableModel

getExportDetails

@GetMapping("/project/{projectId}/details/{exportId}")
public org.springframework.http.ResponseEntity<NcbiSubmissionModel> getExportDetails(@PathVariable
                                                                                     java.lang.Long projectId,
                                                                                     @PathVariable
                                                                                     java.lang.Long exportId)

Get the details of a specific NCBI SRA submission

Parameters:

projectId - Identifier for the current project

exportId - Identifier for the NCBI SRA Submission

Returns:

details about the submission

getNCBIExportsForAdmin

@RequestMapping("/list")
@PreAuthorize("hasRole(\'ROLE_ADMIN\')")
public org.springframework.http.ResponseEntity<TableResponse<NcbiExportSubmissionAdminTableModel>> getNCBIExportsForAdmin(@RequestBody
                                                                                                                          TableRequest request)

Get a paged list of NCBI Export Submission based on the current page information

Parameters:

request - TableRequest containing details about the current page

Returns:

TableResponse of NCBI Export Submissions

getNcbiPlatforms

@GetMapping("/platforms")
public java.util.EnumMap<NcbiPlatform,java.util.List<java.lang.String>> getNcbiPlatforms()

Get all the available NCBI Sequencing platforms.

Returns:

EnumMap with the key being the brand and the value a List of their platforms.

getNcbiSources

@GetMapping("/sources")
public java.util.List<java.lang.String> getNcbiSources()

Get a list of NCBI Library Sources

Returns:

List of NCBI Library Sources

getNcbiStrategies

@GetMapping("/strategies")
public java.util.List<java.lang.String> getNcbiStrategies()

Get a list of NCBI allowed Library strategies

Returns:

List of NCBI Library Strategies

getNcbiSelection

@GetMapping("/selections")
public java.util.List<java.lang.String> getNcbiSelection()

Get a list of NCBI allowed Library selection techniques

Returns:

List of NCBI Library Selections

submitNcbiExport

@PostMapping("/submit")
public void submitNcbiExport(@RequestBody
                             NcbiSubmissionRequest submission)

Submit a NCBI SRA Submission

Parameters:

submission - details about the submission