Package ca.corefacility.bioinformatics.irida.ria.web.files

Class SequenceFileAjaxController

  • @RestController
@Scope("session")
@RequestMapping("/ajax/sequenceFiles")
public class SequenceFileAjaxController
extends java.lang.Object
    Ajax controller to get data for the fastqc page.

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      void downloadSequenceFile​(java.lang.Long sequencingObjectId, java.lang.Long sequenceFileId, javax.servlet.http.HttpServletResponse response)
      Download the sequence file
      org.springframework.http.ResponseEntity<FastQCImagesResponse> getFastQCCharts​(java.lang.Long sequencingObjectId, java.lang.Long sequenceFileId)
      Gets the fastqc charts for the file.
      org.springframework.http.ResponseEntity<FastQCDetailsResponse> getFastQCDetails​(java.lang.Long sequencingObjectId, java.lang.Long sequenceFileId)
      Gets the details for the file fastqc results.

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    • Constructor Detail

      • SequenceFileAjaxController

        @Autowired
public SequenceFileAjaxController​(UISequenceFileService uiSequenceFileService)

    • Method Detail

      • getFastQCDetails

        @GetMapping("/fastqc-details")
public org.springframework.http.ResponseEntity<FastQCDetailsResponse> getFastQCDetails​(@RequestParam
                                                                                       java.lang.Long sequencingObjectId,
                                                                                       @RequestParam
                                                                                       java.lang.Long sequenceFileId)
        Gets the details for the file fastqc results.
        Parameters:
        sequencingObjectId - ID for the SequencingObject
        sequenceFileId - Id for the SequenceFile
        Returns:
        FastQCDetailsResponse dto which contains the sequencing object, sequence file, and the fastqc result.

      • getFastQCCharts

        @GetMapping("/fastqc-charts")
public org.springframework.http.ResponseEntity<FastQCImagesResponse> getFastQCCharts​(@RequestParam
                                                                                     java.lang.Long sequencingObjectId,
                                                                                     @RequestParam
                                                                                     java.lang.Long sequenceFileId)
                                                                              throws java.io.IOException
        Gets the fastqc charts for the file.
        Parameters:
        sequencingObjectId - ID for the SequencingObject
        sequenceFileId - Id for the SequenceFile
        Returns:
        FastQCImagesResponse dto which has the byte arrays for the images as well as the fastqc version
        Throws:
        java.io.IOException - if entity is not found

      • downloadSequenceFile

        @GetMapping("/download")
public void downloadSequenceFile​(@RequestParam
                                 java.lang.Long sequencingObjectId,
                                 @RequestParam
                                 java.lang.Long sequenceFileId,
                                 javax.servlet.http.HttpServletResponse response)
                          throws java.io.IOException
        Download the sequence file
        Parameters:
        sequencingObjectId - ID for the SequencingObject
        sequenceFileId - Id for the SequenceFile
        response - HTTP response object
        Throws:
        java.io.IOException - if file is not found