NGSLinkerService (irida 22.09 API)

java.lang.Object
- ca.corefacility.bioinformatics.irida.ria.web.services.NGSLinkerService

@Component
public class NGSLinkerService
extends java.lang.Object

Service for converting data for creating the ngs-linker command.

Constructor Summary

Constructors
Constructor Description

NGSLinkerService(ProjectService projectService, SampleService sampleService)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`java.lang.String`	`generateLinkerCommand(NGSLinkerCmdRequest request)`	Generate the full ngs-linker command.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - NGSLinkerService
```
@Autowired
public NGSLinkerService(ProjectService projectService,
                        SampleService sampleService)
```
- Method Detail
  - generateLinkerCommand
```
public java.lang.String generateLinkerCommand(NGSLinkerCmdRequest request)
```
    Generate the full ngs-linker command. If just the project identifier, or identifier for all samples in the project, are passed, then we want to export the entire project. If sample ids are passed then we need to add the specific identifiers to export.
    
    Parameters:
    
    request - NGSLinkerCmdRequest
    
    Returns:
    
    the actual ngs-linker command.