Package ca.corefacility.bioinformatics.irida.ria.web.services

Class UIMetadataFileImportService

java.lang.Object

ca.corefacility.bioinformatics.irida.ria.web.services.UIMetadataFileImportService

@Component
public class UIMetadataFileImportService
extends java.lang.Object

UI service to handle parsing metadata files so they can be saved to the session.

Constructor Summary

Constructors

Constructor	Description
UIMetadataFileImportService(ProjectService projectService, SampleService sampleService)

Method Summary

Modifier and Type	Method	Description
SampleMetadataStorage	parseCSV(java.lang.Long projectId, java.io.InputStream inputStream)	Parse metadata from an csv file.
SampleMetadataStorage	parseExcel(java.lang.Long projectId, java.io.InputStream inputStream, java.lang.String extension)	Parse metadata from an excel file.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

UIMetadataFileImportService

@Autowired
public UIMetadataFileImportService(ProjectService projectService,
                                   SampleService sampleService)

Method Detail

parseCSV

public SampleMetadataStorage parseCSV(java.lang.Long projectId,
                                      java.io.InputStream inputStream)
                               throws java.io.IOException

Parse metadata from an csv file.

Parameters:

projectId - Long The project identifier.

inputStream - The inputStream of the csv file.

Returns:

SampleMetadataStorage contains the metadata from file.

Throws:

java.io.IOException - thrown if the extension does not exist.

parseExcel

public SampleMetadataStorage parseExcel(java.lang.Long projectId,
                                        java.io.InputStream inputStream,
                                        java.lang.String extension)
                                 throws java.io.IOException

Parse metadata from an excel file.

Parameters:

projectId - Long The project identifier.

inputStream - The inputStream of the excel file.

extension - The extension of the excel file.

Returns:

SampleMetadataStorage contains the metadata from file.

Throws:

java.io.IOException - thrown if the extension does not exist.