SequenceFileUtilities (irida 22.09 API)

All Known Implementing Classes:

BioJavaSequenceFileUtilitiesImpl
```
public interface SequenceFileUtilities
```
Utility class for executing common functions on sequence files

Method Summary

All Methods Instance Methods Abstract Methods
Modifier and Type	Method	Description
`java.lang.Long`	`countSequenceFileLengthInBases(java.nio.file.Path file)`	Calculate the length of a sequence file in bases

- Method Detail
  - countSequenceFileLengthInBases
```
java.lang.Long countSequenceFileLengthInBases(java.nio.file.Path file)
                                       throws UnsupportedReferenceFileContentError
```
    Calculate the length of a sequence file in bases
    
    Parameters:
    
    file - The reference file object to calculate
    
    Returns:
    
    The number of bases in the file
    
    Throws:
    
    UnsupportedReferenceFileContentError - When the file content is *not* DNA (ambiguous IUPAC bases, protein, etc.)