Serialized Form

Package ca.corefacility.bioinformatics.irida.exceptions

Class ca.corefacility.bioinformatics.irida.exceptions.AnalysisAlreadySetException extends java.lang.Exception implements Serializable

Class ca.corefacility.bioinformatics.irida.exceptions.ConcatenateException extends java.lang.Exception implements Serializable

Class ca.corefacility.bioinformatics.irida.exceptions.DuplicateSampleException extends java.lang.RuntimeException implements Serializable

serialVersionUID:

-432490135272603887L

Class ca.corefacility.bioinformatics.irida.exceptions.EntityExistsException extends java.lang.RuntimeException implements Serializable

serialVersionUID:

7353646703650984698L

Serialized Fields

fieldName

java.lang.String fieldName

Class ca.corefacility.bioinformatics.irida.exceptions.EntityNotFoundException extends java.lang.RuntimeException implements Serializable

serialVersionUID:

2074593569749610287L

Class ca.corefacility.bioinformatics.irida.exceptions.ExecutionManagerConfigurationException extends java.lang.Exception implements Serializable

serialVersionUID:

-7160561564868237213L

Class ca.corefacility.bioinformatics.irida.exceptions.ExecutionManagerDownloadException extends ExecutionManagerException implements Serializable

serialVersionUID:

6602102710037152420L

Class ca.corefacility.bioinformatics.irida.exceptions.ExecutionManagerException extends java.lang.Exception implements Serializable

serialVersionUID:

333234286899354317L

Class ca.corefacility.bioinformatics.irida.exceptions.ExecutionManagerObjectNotFoundException extends UploadException implements Serializable

serialVersionUID:

-8631240265058889252L

Class ca.corefacility.bioinformatics.irida.exceptions.ExistingSampleNameException extends EntityExistsException implements Serializable

Serialized Fields

sample

Sample sample

Class ca.corefacility.bioinformatics.irida.exceptions.FileProcessorTimeoutException extends java.lang.Exception implements Serializable

serialVersionUID:

-5547088975269003017L

Class ca.corefacility.bioinformatics.irida.exceptions.InvalidPropertyException extends java.lang.RuntimeException implements Serializable

serialVersionUID:

-3928623996579573284L

Serialized Fields

affectedClass

java.lang.Class<? extends java.lang.Object> affectedClass

Class ca.corefacility.bioinformatics.irida.exceptions.IridaAccountDisabledException extends java.lang.Exception implements Serializable

Class ca.corefacility.bioinformatics.irida.exceptions.IridaOAuthException extends java.lang.RuntimeException implements Serializable

serialVersionUID:

5281201199554307578L

Serialized Fields

remoteAPI

RemoteAPI remoteAPI

Class ca.corefacility.bioinformatics.irida.exceptions.IridaWorkflowAnalysisTypeException extends IridaWorkflowException implements Serializable

serialVersionUID:

4801881701203933579L

Class ca.corefacility.bioinformatics.irida.exceptions.IridaWorkflowDefaultException extends IridaWorkflowException implements Serializable

serialVersionUID:

-4902782284860573991L

Class ca.corefacility.bioinformatics.irida.exceptions.IridaWorkflowException extends java.lang.Exception implements Serializable

serialVersionUID:

716423852630929108L

Class ca.corefacility.bioinformatics.irida.exceptions.IridaWorkflowLoadException extends IridaWorkflowException implements Serializable

serialVersionUID:

-2054557407529157457L

Class ca.corefacility.bioinformatics.irida.exceptions.IridaWorkflowNoParameterException extends IridaWorkflowParameterException implements Serializable

serialVersionUID:

-8828296188042330090L

Class ca.corefacility.bioinformatics.irida.exceptions.IridaWorkflowNotDisplayableException extends IridaWorkflowLoadException implements Serializable

serialVersionUID:

4583888416199829376L

Class ca.corefacility.bioinformatics.irida.exceptions.IridaWorkflowNotFoundException extends IridaWorkflowLoadException implements Serializable

serialVersionUID:

5002643601663546169L

Class ca.corefacility.bioinformatics.irida.exceptions.IridaWorkflowParameterException extends IridaWorkflowException implements Serializable

serialVersionUID:

-8828296188042330090L

Class ca.corefacility.bioinformatics.irida.exceptions.LinkNotFoundException extends java.lang.RuntimeException implements Serializable

Class ca.corefacility.bioinformatics.irida.exceptions.MetadataImportFileTypeNotSupportedError extends java.lang.RuntimeException implements Serializable

Class ca.corefacility.bioinformatics.irida.exceptions.NcbiXmlParseException extends java.lang.Exception implements Serializable

Class ca.corefacility.bioinformatics.irida.exceptions.NoPercentageCompleteException extends WorkflowException implements Serializable

serialVersionUID:

-5738673935417424230L

Class ca.corefacility.bioinformatics.irida.exceptions.NoSuchValueException extends java.lang.Exception implements Serializable

serialVersionUID:

-1741854317815951619L

Class ca.corefacility.bioinformatics.irida.exceptions.PasswordReusedException extends java.lang.RuntimeException implements Serializable

Class ca.corefacility.bioinformatics.irida.exceptions.PostProcessingException extends java.lang.Exception implements Serializable

serialVersionUID:

7166415585213320003L

Class ca.corefacility.bioinformatics.irida.exceptions.ProjectSynchronizationException extends java.lang.RuntimeException implements Serializable

Class ca.corefacility.bioinformatics.irida.exceptions.ProjectWithoutOwnerException extends java.lang.Exception implements Serializable

serialVersionUID:

-1057466626539625849L

Class ca.corefacility.bioinformatics.irida.exceptions.RemoteFileNotCachedException extends java.lang.RuntimeException implements Serializable

Class ca.corefacility.bioinformatics.irida.exceptions.SampleAnalysisDuplicateException extends WorkflowPreprationException implements Serializable

serialVersionUID:

-432490135272603894L

Class ca.corefacility.bioinformatics.irida.exceptions.SequenceFileAnalysisException extends java.lang.Exception implements Serializable

serialVersionUID:

-8338868725003259599L

Class ca.corefacility.bioinformatics.irida.exceptions.StorageException extends java.lang.RuntimeException implements Serializable

serialVersionUID:

1981775136339995070L

Class ca.corefacility.bioinformatics.irida.exceptions.UnsupportedReferenceFileContentError extends java.lang.Error implements Serializable

Class ca.corefacility.bioinformatics.irida.exceptions.UploadConnectionException extends UploadException implements Serializable

serialVersionUID:

736574425314133873L

Class ca.corefacility.bioinformatics.irida.exceptions.UploadErrorException extends UploadException implements Serializable

Class ca.corefacility.bioinformatics.irida.exceptions.UploadException extends ExecutionManagerException implements Serializable

serialVersionUID:

8934376035189966872L

Class ca.corefacility.bioinformatics.irida.exceptions.UploadTimeoutException extends UploadException implements Serializable

Class ca.corefacility.bioinformatics.irida.exceptions.UserGroupWithoutOwnerException extends java.lang.Exception implements Serializable

Class ca.corefacility.bioinformatics.irida.exceptions.WebpackParserException extends java.lang.RuntimeException implements Serializable

Class ca.corefacility.bioinformatics.irida.exceptions.WorkflowException extends ExecutionManagerException implements Serializable

serialVersionUID:

-5418939764042687991L

Class ca.corefacility.bioinformatics.irida.exceptions.WorkflowInvalidException extends WorkflowException implements Serializable

serialVersionUID:

-3946466932639734867L

Class ca.corefacility.bioinformatics.irida.exceptions.WorkflowPreprationException extends WorkflowException implements Serializable

serialVersionUID:

6727124691365346057L

Package ca.corefacility.bioinformatics.irida.exceptions.galaxy

Class ca.corefacility.bioinformatics.irida.exceptions.galaxy.CreateLibraryException extends UploadException implements Serializable

serialVersionUID:

-5461414386915764417L

Class ca.corefacility.bioinformatics.irida.exceptions.galaxy.DeleteGalaxyObjectFailedException extends ExecutionManagerException implements Serializable

serialVersionUID:

-737246883706607391L

Class ca.corefacility.bioinformatics.irida.exceptions.galaxy.GalaxyDatasetException extends ExecutionManagerException implements Serializable

serialVersionUID:

-5320234853643948588L

Class ca.corefacility.bioinformatics.irida.exceptions.galaxy.GalaxyDatasetNotFoundException extends GalaxyDatasetException implements Serializable

serialVersionUID:

-9021987573289725500L

Class ca.corefacility.bioinformatics.irida.exceptions.galaxy.GalaxyOutputsForWorkflowException extends WorkflowException implements Serializable

serialVersionUID:

5281884851300317788L

Class ca.corefacility.bioinformatics.irida.exceptions.galaxy.GalaxyToolDataTableException extends ExecutionManagerException implements Serializable

serialVersionUID:

5892958304576147418L

Class ca.corefacility.bioinformatics.irida.exceptions.galaxy.NoGalaxyHistoryException extends ExecutionManagerObjectNotFoundException implements Serializable

serialVersionUID:

6482869317425193110L

Class ca.corefacility.bioinformatics.irida.exceptions.galaxy.WorkflowUploadException extends ExecutionManagerException implements Serializable

serialVersionUID:

-1966345755487182884L

Package ca.corefacility.bioinformatics.irida.exceptions.pipelines

Class ca.corefacility.bioinformatics.irida.exceptions.pipelines.MissingRequiredParametersException extends java.lang.Exception implements Serializable

Class ca.corefacility.bioinformatics.irida.exceptions.pipelines.ReferenceFileRequiredException extends java.lang.Exception implements Serializable

Package ca.corefacility.bioinformatics.irida.model.user

Class ca.corefacility.bioinformatics.irida.model.user.User extends IridaRepresentationModel implements Serializable

serialVersionUID:

-7516211470008791995L

Serialized Fields

announcements

java.util.List<AnnouncementUserJoin> announcements

createdDate

@NotNull java.util.Date createdDate

credentialsNonExpired

boolean credentialsNonExpired

email

@NotNull(message="{user.email.notnull}") @Size(min=5,message="{user.email.size}") @Email(message="{user.email.invalid}") java.lang.String email

enabled

@javax.validation.constraints.NotNull boolean enabled

firstName

@NotNull(message="{user.firstName.notnull}") @Size(min=2,message="{user.firstName.size}") java.lang.String firstName

id

java.lang.Long id

lastLogin

java.util.Date lastLogin

lastName

@NotNull(message="{user.lastName.notnull}") @Size(min=2,message="{user.lastName.size}") java.lang.String lastName

locale

java.lang.String locale

modifiedDate

java.util.Date modifiedDate

password

@NotNull(message="{user.password.notnull}") @Size(min=8,max=1024,message="{user.password.size}") @Pattern(regexp="^.*[A-Z].*$",message="{user.password.uppercase}") @Pattern(regexp="^.*[0-9].*$",message="{user.password.number}") @Pattern(regexp="^.*[a-z].*$",message="{user.password.lowercase}") @Pattern(regexp="^.*[!@#$%^&*()+?/<>=.\\\\{}].*$",message="{user.password.special}") java.lang.String password

phoneNumber

@Size(min=4,message="{user.phoneNumber.size}") java.lang.String phoneNumber

projects

java.util.List<ProjectUserJoin> projects

projectSubscriptions

java.util.List<ProjectSubscription> projectSubscriptions

systemRole

@NotNull(message="{user.systemRole.notnull}") Role systemRole

tokens

java.util.Collection<RemoteAPIToken> tokens

username

@NotNull(message="{user.username.notnull}") @Size(min=3,message="{user.username.size}") java.lang.String username

Package ca.corefacility.bioinformatics.irida.oauth2

Class ca.corefacility.bioinformatics.irida.oauth2.OAuth2ResourceOwnerPasswordAuthenticationToken extends org.springframework.security.oauth2.server.authorization.authentication.OAuth2AuthorizationGrantAuthenticationToken implements Serializable

Serialized Fields

scopes

java.util.Set<java.lang.String> scopes

Package ca.corefacility.bioinformatics.irida.plugins

Class ca.corefacility.bioinformatics.irida.plugins.IridaPluginException extends java.lang.Exception implements Serializable

serialVersionUID:

-5437160745632390354L

Package ca.corefacility.bioinformatics.irida.processing

Class ca.corefacility.bioinformatics.irida.processing.FileProcessorException extends java.lang.RuntimeException implements Serializable

serialVersionUID:

7389408065012958110L

Package ca.corefacility.bioinformatics.irida.repositories.relational.auditing

Class ca.corefacility.bioinformatics.irida.repositories.relational.auditing.UserRevEntity extends org.hibernate.envers.DefaultRevisionEntity implements Serializable

serialVersionUID:

-3574490742045694417L

Serialized Fields

clientId

java.lang.Long clientId

userId

java.lang.Long userId

Package ca.corefacility.bioinformatics.irida.repositories.specification

Class ca.corefacility.bioinformatics.irida.repositories.specification.ProjectSampleJoinSpecification extends java.lang.Object implements Serializable

Serialized Fields

list

java.util.List<SearchCriteria> list

Package ca.corefacility.bioinformatics.irida.ria.config.thymeleaf.webpacker.util

Class ca.corefacility.bioinformatics.irida.ria.config.thymeleaf.webpacker.util.WebpackAssetsManifestDeserializer extends com.fasterxml.jackson.databind.deser.std.StdDeserializer<WebpackAssetsManifest> implements Serializable

Class ca.corefacility.bioinformatics.irida.ria.config.thymeleaf.webpacker.util.WebpackEntryDeserializer extends com.fasterxml.jackson.databind.deser.std.StdDeserializer<WebpackEntry> implements Serializable

Package ca.corefacility.bioinformatics.irida.ria.web.ajax.dto

Class ca.corefacility.bioinformatics.irida.ria.web.ajax.dto.SampleFilesResponse extends java.util.HashMap<java.lang.Long,SampleExportFiles> implements Serializable

Package ca.corefacility.bioinformatics.irida.ria.web.ajax.projects.settings.exceptions

Class ca.corefacility.bioinformatics.irida.ria.web.ajax.projects.settings.exceptions.UpdateException extends java.lang.Exception implements Serializable

Package ca.corefacility.bioinformatics.irida.ria.web.components.datatables.export

Class ca.corefacility.bioinformatics.irida.ria.web.components.datatables.export.ExportFormatException extends java.lang.RuntimeException implements Serializable

Package ca.corefacility.bioinformatics.irida.ria.web.errors

Class ca.corefacility.bioinformatics.irida.ria.web.errors.AjaxItemNotFoundException extends java.lang.Error implements Serializable

Class ca.corefacility.bioinformatics.irida.ria.web.errors.SavedMetadataException extends java.lang.Exception implements Serializable

Serialized Fields

storage

SampleMetadataStorage storage

Package ca.corefacility.bioinformatics.irida.ria.web.exceptions

Class ca.corefacility.bioinformatics.irida.ria.web.exceptions.UIAddAssociatedProjectException extends java.lang.Exception implements Serializable

Class ca.corefacility.bioinformatics.irida.ria.web.exceptions.UIConstraintViolationException extends java.lang.Exception implements Serializable

Serialized Fields

errorMessage

java.lang.String errorMessage

errors

java.util.Map<java.lang.String,java.lang.String> errors

Class ca.corefacility.bioinformatics.irida.ria.web.exceptions.UIEmailSendException extends org.springframework.mail.MailSendException implements Serializable

Class ca.corefacility.bioinformatics.irida.ria.web.exceptions.UIEntityNotFoundException extends EntityNotFoundException implements Serializable

Class ca.corefacility.bioinformatics.irida.ria.web.exceptions.UIProjectWithoutOwnerException extends ProjectWithoutOwnerException implements Serializable

Class ca.corefacility.bioinformatics.irida.ria.web.exceptions.UIRemoveAssociatedProjectException extends java.lang.Exception implements Serializable

Class ca.corefacility.bioinformatics.irida.ria.web.exceptions.UIShareSamplesException extends java.lang.Exception implements Serializable

Class ca.corefacility.bioinformatics.irida.ria.web.exceptions.UIUserFormException extends java.lang.Exception implements Serializable

Serialized Fields

errors

java.util.Map<java.lang.String,java.lang.String> errors

Class ca.corefacility.bioinformatics.irida.ria.web.exceptions.UIUserStatusException extends java.lang.Exception implements Serializable

Package ca.corefacility.bioinformatics.irida.ria.web.linelist.dto

Class ca.corefacility.bioinformatics.irida.ria.web.linelist.dto.UISampleMetadata extends java.util.HashMap<java.lang.String,java.lang.String> implements Serializable

Package ca.corefacility.bioinformatics.irida.ria.web.projects.error

Class ca.corefacility.bioinformatics.irida.ria.web.projects.error.SampleMergeException extends java.lang.Exception implements Serializable

Package ca.corefacility.bioinformatics.irida.ria.web.sessionAttrs

Class ca.corefacility.bioinformatics.irida.ria.web.sessionAttrs.Cart extends java.util.HashMap<java.lang.Long,java.lang.Long> implements Serializable

Serialized Fields

sampleNames

java.util.HashMap<java.lang.Long,java.lang.String> sampleNames

Package ca.corefacility.bioinformatics.irida.security

Class ca.corefacility.bioinformatics.irida.security.ProjectSynchronizationAuthenticationToken extends org.springframework.security.web.authentication.preauth.PreAuthenticatedAuthenticationToken implements Serializable

Class ca.corefacility.bioinformatics.irida.security.SequencerUILoginException extends org.springframework.security.authentication.AccountStatusException implements Serializable

Package ca.corefacility.bioinformatics.irida.security.permissions

Class ca.corefacility.bioinformatics.irida.security.permissions.UndefinedPermissionException extends java.lang.RuntimeException implements Serializable

serialVersionUID:

-5643657584405285035L

Package ca.corefacility.bioinformatics.irida.web.controller.api.exception

Class ca.corefacility.bioinformatics.irida.web.controller.api.exception.GenericsException extends java.lang.RuntimeException implements Serializable

serialVersionUID:

7337013431300992746L

Package ca.corefacility.bioinformatics.irida.web.controller.api.json

Class ca.corefacility.bioinformatics.irida.web.controller.api.json.DateJson.DateDeserializer extends com.fasterxml.jackson.databind.deser.std.StdDeserializer<java.util.Date> implements Serializable

serialVersionUID:

3866202191160764291L

Class ca.corefacility.bioinformatics.irida.web.controller.api.json.DateJson.DateSerializer extends com.fasterxml.jackson.databind.ser.std.StdSerializer<java.util.Date> implements Serializable

serialVersionUID:

5016991815188473911L

Class ca.corefacility.bioinformatics.irida.web.controller.api.json.PathJson.PathSerializer extends com.fasterxml.jackson.databind.ser.std.StdSerializer<java.nio.file.Path> implements Serializable

Class ca.corefacility.bioinformatics.irida.web.controller.api.json.TimestampJson.TimestampSerializer extends com.fasterxml.jackson.databind.ser.std.StdSerializer<java.util.Date> implements Serializable