Tutorial 01 - Test

This tutorial demonstrates the use of panGWAS on a tiny, synthetic dataset.

1. Run the test data through a GWAS on the trait resistant.

   nextflow run phac-nml/pangwas -profile test --trait resistant

The samples sample4 and sample3 are the ones that are labelled as “resistant” and we can see the following variants are significantly associated with this trait:

• Heatmap: results/test/heatmap/resistant/resistant.plot.svg