Package ca.corefacility.bioinformatics.irida.model

Class NcbiExportSubmission

java.lang.Object

ca.corefacility.bioinformatics.irida.model.NcbiExportSubmission

All Implemented Interfaces:

IridaThing, MutableIridaThing, Timestamped<java.lang.Long>

@Entity
public class NcbiExportSubmission
extends java.lang.Object
implements MutableIridaThing

Class storing a request to upload sequence data to NCBI.

See Also:

Ncbi SRA experiment guide

Constructor Summary

Constructors

Constructor	Description
NcbiExportSubmission()
NcbiExportSubmission(Project project, User submitter, java.lang.String bioProjectId, java.lang.String organization, java.lang.String ncbiNamespace, java.util.Date releaseDate, java.util.List<NcbiBioSampleFiles> bioSampleFiles)

Method Summary

Modifier and Type	Method	Description
java.lang.String	getBioProjectId()
java.util.List<NcbiBioSampleFiles>	getBioSampleFiles()
java.util.Date	getCreatedDate()	Get the created date of the object
java.lang.String	getDirectoryPath()
java.lang.Long	getId()	Get the numerical identifier for this object
java.lang.String	getLabel()	Get a human readable label for this object.
java.util.Date	getModifiedDate()	Get the date that this object was last modified
java.lang.String	getNcbiNamespace()
java.lang.String	getOrganization()
Project	getProject()
java.util.Date	getReleaseDate()
User	getSubmitter()
ExportUploadState	getUploadState()
void	setBioProjectId(java.lang.String bioProjectId)
void	setBioSampleFiles(java.util.List<NcbiBioSampleFiles> bioSampleFiles)
void	setDirectoryPath(java.lang.String directoryPath)
void	setId(java.lang.Long id)	Set the numerical identifier for this object
void	setModifiedDate(java.util.Date modifiedDate)	Set the modification time of this object
void	setNcbiNamespace(java.lang.String ncbiNamespace)
void	setOrganization(java.lang.String organization)
void	setUploadState(ExportUploadState uploadState)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ca.corefacility.bioinformatics.irida.model.IridaThing

getIdentifier, setLabel

Constructor Detail

NcbiExportSubmission

public NcbiExportSubmission()

NcbiExportSubmission

public NcbiExportSubmission(Project project,
                            User submitter,
                            java.lang.String bioProjectId,
                            java.lang.String organization,
                            java.lang.String ncbiNamespace,
                            java.util.Date releaseDate,
                            java.util.List<NcbiBioSampleFiles> bioSampleFiles)

Method Detail

getCreatedDate

public java.util.Date getCreatedDate()

Description copied from interface: Timestamped

Get the created date of the object

Specified by:

getCreatedDate in interface Timestamped<java.lang.Long>

Returns:

A Date object of the created date

getModifiedDate

public java.util.Date getModifiedDate()

Description copied from interface: MutableIridaThing

Get the date that this object was last modified

Specified by:

getModifiedDate in interface MutableIridaThing

Returns:

Date object of the modified date

setModifiedDate

public void setModifiedDate(java.util.Date modifiedDate)

Description copied from interface: MutableIridaThing

Set the modification time of this object

Specified by:

setModifiedDate in interface MutableIridaThing

Parameters:

modifiedDate - The date where this object was modified

getLabel

public java.lang.String getLabel()

Description copied from interface: IridaThing

Get a human readable label for this object.

Specified by:

getLabel in interface IridaThing

Returns:

a human-readable label for the object.

getId

public java.lang.Long getId()

Description copied from interface: IridaThing

Get the numerical identifier for this object

Specified by:

getId in interface IridaThing

Specified by:

getId in interface Timestamped<java.lang.Long>

Returns:

the numerical identifier for the object

setId

public void setId(java.lang.Long id)

Description copied from interface: MutableIridaThing

Set the numerical identifier for this object

Specified by:

setId in interface MutableIridaThing

Parameters:

id - The ID to set

getProject

public Project getProject()

getOrganization

public java.lang.String getOrganization()

setOrganization

public void setOrganization(java.lang.String organization)

getBioSampleFiles

public java.util.List<NcbiBioSampleFiles> getBioSampleFiles()

setBioSampleFiles

public void setBioSampleFiles(java.util.List<NcbiBioSampleFiles> bioSampleFiles)

setUploadState

public void setUploadState(ExportUploadState uploadState)

getUploadState

public ExportUploadState getUploadState()

getNcbiNamespace

public java.lang.String getNcbiNamespace()

setNcbiNamespace

public void setNcbiNamespace(java.lang.String ncbiNamespace)

getBioProjectId

public java.lang.String getBioProjectId()

setBioProjectId

public void setBioProjectId(java.lang.String bioProjectId)

getReleaseDate

public java.util.Date getReleaseDate()

getSubmitter

public User getSubmitter()

getDirectoryPath

public java.lang.String getDirectoryPath()

setDirectoryPath

public void setDirectoryPath(java.lang.String directoryPath)