Package ca.corefacility.bioinformatics.irida.model.export

Class NcbiBioSampleFiles

java.lang.Object

ca.corefacility.bioinformatics.irida.model.export.NcbiBioSampleFiles

@Entity
public class NcbiBioSampleFiles
extends java.lang.Object

SequenceFiles and SequenceFilePairs associated with a NcbiExportSubmission.

See Also:

NcbiExportSubmission

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	NcbiBioSampleFiles.Builder	Builder class for NcbiBioSampleFiles

Constructor Summary

Constructors

Constructor	Description
NcbiBioSampleFiles()
NcbiBioSampleFiles(java.lang.String namespace)
NcbiBioSampleFiles(java.lang.String bioSample, java.util.Set<SingleEndSequenceFile> files, java.util.Set<SequenceFilePair> pairs, NcbiInstrumentModel instrument_model, java.lang.String library_name, NcbiLibrarySelection library_selection, NcbiLibrarySource library_source, NcbiLibraryStrategy library_strategy, java.lang.String library_construction_protocol, java.lang.String namespace)

Method Summary

Modifier and Type	Method	Description
java.lang.String	getAccession()
java.lang.String	getBioSample()
java.util.Set<SingleEndSequenceFile>	getFiles()
java.lang.String	getId()
NcbiInstrumentModel	getInstrumentModel()
java.lang.String	getLibraryConstructionProtocol()
java.lang.String	getLibraryName()
NcbiLibrarySelection	getLibrarySelection()
NcbiLibrarySource	getLibrarySource()
NcbiLibraryStrategy	getLibraryStrategy()
java.util.Set<SequenceFilePair>	getPairs()
ExportUploadState	getSubmissionStatus()
void	setAccession(java.lang.String accession)
void	setFiles(java.util.Set<SingleEndSequenceFile> files)
void	setId(java.lang.String id)
void	setPairs(java.util.Set<SequenceFilePair> pairs)
void	setSubmissionStatus(ExportUploadState submissionStatus)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

NcbiBioSampleFiles

public NcbiBioSampleFiles()

NcbiBioSampleFiles

public NcbiBioSampleFiles(java.lang.String namespace)

NcbiBioSampleFiles

public NcbiBioSampleFiles(java.lang.String bioSample,
                          java.util.Set<SingleEndSequenceFile> files,
                          java.util.Set<SequenceFilePair> pairs,
                          NcbiInstrumentModel instrument_model,
                          java.lang.String library_name,
                          NcbiLibrarySelection library_selection,
                          NcbiLibrarySource library_source,
                          NcbiLibraryStrategy library_strategy,
                          java.lang.String library_construction_protocol,
                          java.lang.String namespace)

Method Detail

getBioSample

public java.lang.String getBioSample()

getFiles

public java.util.Set<SingleEndSequenceFile> getFiles()

getId

public java.lang.String getId()

setId

public void setId(java.lang.String id)

getPairs

public java.util.Set<SequenceFilePair> getPairs()

setFiles

public void setFiles(java.util.Set<SingleEndSequenceFile> files)

setPairs

public void setPairs(java.util.Set<SequenceFilePair> pairs)

getInstrumentModel

public NcbiInstrumentModel getInstrumentModel()

getLibraryConstructionProtocol

public java.lang.String getLibraryConstructionProtocol()

getLibraryName

public java.lang.String getLibraryName()

getLibrarySelection

public NcbiLibrarySelection getLibrarySelection()

getLibrarySource

public NcbiLibrarySource getLibrarySource()

getLibraryStrategy

public NcbiLibraryStrategy getLibraryStrategy()

getSubmissionStatus

public ExportUploadState getSubmissionStatus()

setSubmissionStatus

public void setSubmissionStatus(ExportUploadState submissionStatus)

getAccession

public java.lang.String getAccession()

setAccession

public void setAccession(java.lang.String accession)