Package ca.corefacility.bioinformatics.irida.model.run

Class SequencingRun

java.lang.Object

ca.corefacility.bioinformatics.irida.model.IridaRepresentationModel

ca.corefacility.bioinformatics.irida.model.run.SequencingRun

All Implemented Interfaces:

IridaThing, MutableIridaThing, Timestamped<java.lang.Long>, java.lang.Comparable<SequencingRun>

@Entity
public class SequencingRun
extends IridaRepresentationModel
implements MutableIridaThing, java.lang.Comparable<SequencingRun>

This class represents a collection of sequence files that have come off one run of a sequencer.

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	SequencingRun.LayoutType	The type of layout for the run.

Constructor Summary

Constructors

Modifier	Constructor	Description
protected	SequencingRun()
	SequencingRun(SequencingRun.LayoutType layoutType, java.lang.String sequencerType)

Method Summary

Modifier and Type	Method	Description
void	addOptionalProperty(java.lang.String key, java.lang.String value)	Add one optional property to the map of properties
int	compareTo(SequencingRun o)
boolean	equals(java.lang.Object obj)
java.util.Date	getCreatedDate()	Get the created date of the object
java.lang.String	getDescription()
java.lang.Long	getId()	Get the numerical identifier for this object
java.lang.String	getLabel()	Get a human readable label for this object.
SequencingRun.LayoutType	getLayoutType()
java.util.Date	getModifiedDate()	Get the date that this object was last modified
java.util.Map<java.lang.String,java.lang.String>	getOptionalProperties()	Get the Map of optional properties
java.lang.String	getOptionalProperty(java.lang.String key)	Get an individual optional property
java.lang.String	getSequencerType()	Get the sequencer type
SequencingRunUploadStatus	getUploadStatus()
User	getUser()
int	hashCode()
void	setDescription(java.lang.String description)
void	setId(java.lang.Long id)	Set the numerical identifier for this object
void	setModifiedDate(java.util.Date modifiedDate)	Set the modification time of this object
void	setSequencerType(java.lang.String sequencerType)
void	setUser(User user)

Methods inherited from class ca.corefacility.bioinformatics.irida.model.IridaRepresentationModel

add, add, getLink, getLinks, getRemoteStatus, getSelfHref, hasLink, hasLinks, removeLinks, setRemoteStatus, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface ca.corefacility.bioinformatics.irida.model.IridaThing

getIdentifier, setLabel

Constructor Detail

SequencingRun

protected SequencingRun()

SequencingRun

public SequencingRun(SequencingRun.LayoutType layoutType,
                     java.lang.String sequencerType)

Method Detail

getId

public java.lang.Long getId()

Description copied from interface: IridaThing

Get the numerical identifier for this object

Specified by:

getId in interface IridaThing

Specified by:

getId in interface Timestamped<java.lang.Long>

Returns:

the numerical identifier for the object

setId

public void setId(java.lang.Long id)

Description copied from interface: MutableIridaThing

Set the numerical identifier for this object

Specified by:

setId in interface MutableIridaThing

Parameters:

id - The ID to set

getDescription

public java.lang.String getDescription()

setDescription

public void setDescription(java.lang.String description)

getCreatedDate

public java.util.Date getCreatedDate()

Description copied from interface: Timestamped

Get the created date of the object

Specified by:

getCreatedDate in interface Timestamped<java.lang.Long>

Returns:

A Date object of the created date

getModifiedDate

public java.util.Date getModifiedDate()

Description copied from interface: MutableIridaThing

Get the date that this object was last modified

Specified by:

getModifiedDate in interface MutableIridaThing

Returns:

Date object of the modified date

setModifiedDate

public void setModifiedDate(java.util.Date modifiedDate)

Description copied from interface: MutableIridaThing

Set the modification time of this object

Specified by:

setModifiedDate in interface MutableIridaThing

Parameters:

modifiedDate - The date where this object was modified

getLabel

public java.lang.String getLabel()

Get a human readable label for this object.

Specified by:

getLabel in interface IridaThing

Returns:

a human-readable label for the object.

hashCode

public int hashCode()

Description copied from class: IridaRepresentationModel

Overrides:

hashCode in class IridaRepresentationModel

equals

public boolean equals(java.lang.Object obj)

Description copied from class: IridaRepresentationModel

Overrides:

equals in class IridaRepresentationModel

getUploadStatus

public SequencingRunUploadStatus getUploadStatus()

getLayoutType

public SequencingRun.LayoutType getLayoutType()

getUser

public User getUser()

setUser

public void setUser(User user)

addOptionalProperty

public void addOptionalProperty(java.lang.String key,
                                java.lang.String value)

Add one optional property to the map of properties

Parameters:

key - The key of the property to add

value - The value of the property to add

getOptionalProperties

public java.util.Map<java.lang.String,java.lang.String> getOptionalProperties()

Get the Map of optional properties

Returns:

A Map<String,String> of all the optional propertie

getOptionalProperty

public java.lang.String getOptionalProperty(java.lang.String key)

Get an individual optional property

Parameters:

key - The key of the property to read

Returns:

A String of the property's value

getSequencerType

public java.lang.String getSequencerType()

Get the sequencer type

Returns:

Name of the sequencer type

setSequencerType

public void setSequencerType(java.lang.String sequencerType)

compareTo

public int compareTo(SequencingRun o)

Specified by:

compareTo in interface java.lang.Comparable<SequencingRun>