Fast5Object (irida 22.09 API)

java.lang.Object
- ca.corefacility.bioinformatics.irida.model.IridaRepresentationModel
- - ca.corefacility.bioinformatics.irida.model.sequenceFile.SequencingObject
  - - ca.corefacility.bioinformatics.irida.model.sequenceFile.Fast5Object

All Implemented Interfaces:

IridaThing, MutableIridaThing, RemoteSynchronizable, Timestamped<java.lang.Long>
```
@Entity
public class Fast5Object
extends SequencingObject
```
SequencingObject implementation for storing .fast5 files.

Nested Class Summary

Nested Classes
Modifier and Type Class Description

static class Fast5Object.Fast5Type
Type of file stored buy this fast5 object
- Nested classes/interfaces inherited from class ca.corefacility.bioinformatics.irida.model.sequenceFile.SequencingObject
  SequencingObject.ProcessingState

Constructor Summary

Constructors
Modifier Constructor Description

protected Fast5Object()

Fast5Object(SequenceFile file)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`Fast5Object.Fast5Type`	`getFast5Type()`
`SequenceFile`	`getFile()`
`java.util.Set<SequenceFile>`	`getFiles()`	Get the `SequenceFile`s associated with this `SequencingObject`
`java.lang.String`	`getLabel()`	Get a human readable label for this object.
`void`	`setFast5Type(Fast5Object.Fast5Type fast5Type)`
`void`	`setModifiedDate(java.util.Date modifiedDate)`	Throws `UnsupportedOperationException` because you should not be able to update a file.

Methods inherited from class ca.corefacility.bioinformatics.irida.model.sequenceFile.SequencingObject
equals, getAutomatedAssembly, getCreatedDate, getFileProcessor, getFileWithId, getId, getModifiedDate, getProcessingState, getQcEntries, getRemoteStatus, getSequencingRun, getSistrTyping, hashCode, setAutomatedAssembly, setFileProcessor, setId, setProcessingState, setQcEntries, setRemoteStatus, setSequencingRun, setSistrTyping

Methods inherited from class ca.corefacility.bioinformatics.irida.model.IridaRepresentationModel
add, add, getLink, getLinks, getSelfHref, hasLink, hasLinks, removeLinks, toString

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface ca.corefacility.bioinformatics.irida.model.IridaThing
getIdentifier, setLabel

Methods inherited from interface ca.corefacility.bioinformatics.irida.model.remote.RemoteSynchronizable
isRemote

- Constructor Detail
  - Fast5Object
```
protected Fast5Object()
```
  - Fast5Object
```
public Fast5Object(SequenceFile file)
```
- Method Detail
  - getFiles
```
public java.util.Set<SequenceFile> getFiles()
```
    Get the SequenceFiles associated with this SequencingObject
    
    Specified by:
    
    getFiles in class SequencingObject
    
    Returns:
    
    a Set of SequenceFile
  - setModifiedDate
```
public void setModifiedDate(java.util.Date modifiedDate)
```
    Throws UnsupportedOperationException because you should not be able to update a file.
    
    Parameters:
    
    modifiedDate - The date where this object was modified
  - getLabel
```
public java.lang.String getLabel()
```
    Description copied from interface: IridaThing
    
    Get a human readable label for this object.
    
    Returns:
    
    a human-readable label for the object.
  - getFile
```
public SequenceFile getFile()
```
  - getFast5Type
```
public Fast5Object.Fast5Type getFast5Type()
```
  - setFast5Type
```
public void setFast5Type(Fast5Object.Fast5Type fast5Type)
```