Package ca.corefacility.bioinformatics.irida.model.sequenceFile

Class Summary

Class	Description
Fast5Object	SequencingObject implementation for storing .fast5 files.
OverrepresentedSequence	A SequenceFile may have 0 or more over-represented sequences.
SequenceConcatenation	Class storing when 2 SequencingObjects are concatenated into a new SequencingObject
SequenceFile	A file that may be stored somewhere on the file system and belongs to a particular Sample.
SequenceFilePair	A pair of sequence files in forward/reverse orientation.
SequencingObject	Objects that were obtained from some sequencing platform.
SingleEndSequenceFile	SequencingObject from a single ended sequence run.

Enum Summary

Enum	Description
Fast5Object.Fast5Type	Type of file stored buy this fast5 object
SequencingObject.ProcessingState	The status of the file processing upon upload