Package ca.corefacility.bioinformatics.irida.model.sequenceFile

Class OverrepresentedSequence

java.lang.Object

ca.corefacility.bioinformatics.irida.model.sequenceFile.OverrepresentedSequence

All Implemented Interfaces:

IridaThing, Timestamped<java.lang.Long>, java.lang.Comparable<OverrepresentedSequence>

@Entity
public class OverrepresentedSequence
extends java.lang.Object
implements IridaThing, java.lang.Comparable<OverrepresentedSequence>

A SequenceFile may have 0 or more over-represented sequences.

Constructor Summary

Constructors

Constructor	Description
OverrepresentedSequence(java.lang.String sequence, int count, java.math.BigDecimal percentage, java.lang.String possibleSource)

Method Summary

Modifier and Type	Method	Description
int	compareTo(OverrepresentedSequence o)
boolean	equals(java.lang.Object o)
java.util.Date	getCreatedDate()	Get the created date of the object
java.lang.Long	getId()	Get the numerical identifier for this object
java.lang.String	getLabel()	Get a human readable label for this object.
int	getOverrepresentedSequenceCount()
java.math.BigDecimal	getPercentage()
java.lang.String	getPossibleSource()
java.lang.String	getSequence()
int	hashCode()
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface ca.corefacility.bioinformatics.irida.model.IridaThing

getIdentifier, setLabel

Constructor Detail

OverrepresentedSequence

public OverrepresentedSequence(java.lang.String sequence,
                               int count,
                               java.math.BigDecimal percentage,
                               java.lang.String possibleSource)

Method Detail

hashCode

public int hashCode()

Overrides:

hashCode in class java.lang.Object

equals

public boolean equals(java.lang.Object o)

Overrides:

equals in class java.lang.Object

compareTo

public int compareTo(OverrepresentedSequence o)

Specified by:

compareTo in interface java.lang.Comparable<OverrepresentedSequence>

getSequence

public java.lang.String getSequence()

getOverrepresentedSequenceCount

public int getOverrepresentedSequenceCount()

getPercentage

public java.math.BigDecimal getPercentage()

getPossibleSource

public java.lang.String getPossibleSource()

getId

public java.lang.Long getId()

Description copied from interface: IridaThing

Get the numerical identifier for this object

Specified by:

getId in interface IridaThing

Specified by:

getId in interface Timestamped<java.lang.Long>

Returns:

the numerical identifier for the object

getLabel

public java.lang.String getLabel()

Description copied from interface: IridaThing

Get a human readable label for this object.

Specified by:

getLabel in interface IridaThing

Returns:

a human-readable label for the object.

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

getCreatedDate

public java.util.Date getCreatedDate()

Description copied from interface: Timestamped

Get the created date of the object

Specified by:

getCreatedDate in interface Timestamped<java.lang.Long>

Returns:

A Date object of the created date