Package ca.corefacility.bioinformatics.irida.model.workflow.analysis

Class JobError

java.lang.Object

ca.corefacility.bioinformatics.irida.model.IridaRepresentationModel

ca.corefacility.bioinformatics.irida.model.workflow.analysis.JobError

All Implemented Interfaces:

IridaThing, Timestamped<java.lang.Long>, java.lang.Comparable<JobError>

@Entity
public class JobError
extends IridaRepresentationModel
implements IridaThing, java.lang.Comparable<JobError>

Galaxy Job failure information when a tool in a IRIDA workflow produces an error state for an AnalysisSubmission

Constructor Summary

Constructors

Constructor	Description
JobError()	for hibernate
JobError(AnalysisSubmission submission, com.github.jmchilton.blend4j.galaxy.beans.JobDetails job, com.github.jmchilton.blend4j.galaxy.beans.HistoryContentsProvenance provenance, com.github.jmchilton.blend4j.galaxy.beans.Tool tool)

Method Summary

Modifier and Type	Method	Description
int	compareTo(JobError o)
boolean	equals(java.lang.Object o)
AnalysisSubmission	getAnalysisSubmission()
java.lang.String	getCommandLine()
java.util.Date	getCreatedDate()	Get the created date of the object
int	getExitCode()
java.lang.String	getHistoryId()
java.lang.Long	getId()	Get the numerical identifier for this object
java.lang.String	getJobId()
java.lang.String	getLabel()	Get a human readable label for this object.
java.lang.String	getParameters()
java.lang.String	getProvenanceId()
java.util.UUID	getProvenanceUUID()
java.lang.String	getStandardError()
java.lang.String	getStandardOutput()
java.lang.String	getToolDescription()
java.lang.String	getToolId()
java.lang.String	getToolName()
java.lang.String	getToolVersion()
java.util.Date	getUpdatedDate()
int	hashCode()
java.lang.String	toString()

Methods inherited from class ca.corefacility.bioinformatics.irida.model.IridaRepresentationModel

add, add, getLink, getLinks, getRemoteStatus, getSelfHref, hasLink, hasLinks, removeLinks, setRemoteStatus

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface ca.corefacility.bioinformatics.irida.model.IridaThing

getIdentifier, setLabel

Constructor Detail

JobError

public JobError()

for hibernate

JobError

public JobError(AnalysisSubmission submission,
                com.github.jmchilton.blend4j.galaxy.beans.JobDetails job,
                com.github.jmchilton.blend4j.galaxy.beans.HistoryContentsProvenance provenance,
                com.github.jmchilton.blend4j.galaxy.beans.Tool tool)

Method Detail

getCreatedDate

public java.util.Date getCreatedDate()

Description copied from interface: Timestamped

Get the created date of the object

Specified by:

getCreatedDate in interface Timestamped<java.lang.Long>

Returns:

A Date object of the created date

getLabel

public java.lang.String getLabel()

Description copied from interface: IridaThing

Get a human readable label for this object.

Specified by:

getLabel in interface IridaThing

Returns:

a human-readable label for the object.

getId

public java.lang.Long getId()

Description copied from interface: IridaThing

Get the numerical identifier for this object

Specified by:

getId in interface IridaThing

Specified by:

getId in interface Timestamped<java.lang.Long>

Returns:

the numerical identifier for the object

getToolId

public java.lang.String getToolId()

getToolName

public java.lang.String getToolName()

Returns:

Galaxy Tool name

getToolVersion

public java.lang.String getToolVersion()

Returns:

Galaxy Tool version

getToolDescription

public java.lang.String getToolDescription()

Returns:

Galaxy Tool description

getCommandLine

public java.lang.String getCommandLine()

Returns:

Galaxy tool command-line

getParameters

public java.lang.String getParameters()

Returns:

Galaxy tool parameters

getStandardError

public java.lang.String getStandardError()

Returns:

Galaxy tool standard error

getStandardOutput

public java.lang.String getStandardOutput()

Returns:

Galaxy tool standard output

getProvenanceUUID

public java.util.UUID getProvenanceUUID()

getProvenanceId

public java.lang.String getProvenanceId()

Returns:

Galaxy HistoryContentsProvenance id

getJobId

public java.lang.String getJobId()

Returns:

Galaxy JobDetails id

getHistoryId

public java.lang.String getHistoryId()

Returns:

Galaxy History id

getUpdatedDate

public java.util.Date getUpdatedDate()

getExitCode

public int getExitCode()

getAnalysisSubmission

public AnalysisSubmission getAnalysisSubmission()

equals

public boolean equals(java.lang.Object o)

Description copied from class: IridaRepresentationModel

Overrides:

equals in class IridaRepresentationModel

hashCode

public int hashCode()

Description copied from class: IridaRepresentationModel

Overrides:

hashCode in class IridaRepresentationModel

toString

public java.lang.String toString()

Description copied from class: IridaRepresentationModel

Overrides:

toString in class IridaRepresentationModel

compareTo

public int compareTo(JobError o)

Specified by:

compareTo in interface java.lang.Comparable<JobError>