Package ca.corefacility.bioinformatics.irida.model.workflow.execution

Enum InputFileType

  • All Implemented Interfaces:
    java.io.Serializable, java.lang.Comparable<InputFileType>
    public enum InputFileType
extends java.lang.Enum<InputFileType>
    Defines acceptable file types for input to a workflow.

    • Enum Constant Summary

      Enum Constants 
      Enum Constant Description
      FASTA
      A FASTA formatted file.
      FASTQ_SANGER
      The fastqsanger file type (quality scores are Phred+33).
      FASTQ_SANGER_GZ
      The fastqsanger.gz (gzipped) file type (quality scores are Phred+33).

    • Method Summary

      All Methods Static Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      java.lang.String toString()  
      static InputFileType valueOf​(java.lang.String name)
      Returns the enum constant of this type with the specified name.
      static InputFileType[] values()
      Returns an array containing the constants of this enum type, in the order they are declared.

      • Methods inherited from class java.lang.Enum

        clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, valueOf

      • Methods inherited from class java.lang.Object

        getClass, notify, notifyAll, wait, wait, wait

    • Enum Constant Detail

      • FASTQ_SANGER

        public static final InputFileType FASTQ_SANGER
        The fastqsanger file type (quality scores are Phred+33).

      • FASTQ_SANGER_GZ

        public static final InputFileType FASTQ_SANGER_GZ
        The fastqsanger.gz (gzipped) file type (quality scores are Phred+33).

      • FASTA

        public static final InputFileType FASTA
        A FASTA formatted file.

    • Method Detail

      • values

        public static InputFileType[] values()
        Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows: 
        for (InputFileType c : InputFileType.values())
    System.out.println(c);
        Returns:
        an array containing the constants of this enum type, in the order they are declared

      • valueOf

        public static InputFileType valueOf​(java.lang.String name)
        Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)
        Parameters:
        name - the name of the enum constant to be returned.
        Returns:
        the enum constant with the specified name
        Throws:
        java.lang.IllegalArgumentException - if this enum type has no constant with the specified name
        java.lang.NullPointerException - if the argument is null

      • toString

        public java.lang.String toString()
        Overrides:
        toString in class java.lang.Enum<InputFileType>