Class IridaWorkflowStructure


  • public class IridaWorkflowStructure
    extends java.lang.Object
    Defines the structure of a workflow for IRIDA. The structure consists of a JSON-formatted file that has been exported from Galaxy and which defines the set and execution plan for all tools in the workflow. An example of this file is given below.
     {
       "a_galaxy_workflow": "true", 
       "annotation": "", 
       "format-version": "0.1", 
       "name": "TestWorkflow1", 
       "steps": {
       ...
       }
     }
     
    • Constructor Detail

      • IridaWorkflowStructure

        public IridaWorkflowStructure​(java.nio.file.Path workflowFile)
        Builds a new IridaWorkflowStructure with the given information.
        Parameters:
        workflowFile - The file defining the structure of this workflow.
    • Method Detail

      • getWorkflowFile

        public java.nio.file.Path getWorkflowFile()
      • hashCode

        public int hashCode()
        Overrides:
        hashCode in class java.lang.Object
      • equals

        public boolean equals​(java.lang.Object obj)
        Overrides:
        equals in class java.lang.Object
      • toString

        public java.lang.String toString()
        Overrides:
        toString in class java.lang.Object