Package ca.corefacility.bioinformatics.irida.model.workflow.submission

Class AnalysisSubmissionTemplate

java.lang.Object

ca.corefacility.bioinformatics.irida.model.IridaRepresentationModel

ca.corefacility.bioinformatics.irida.model.workflow.submission.AbstractAnalysisSubmission

ca.corefacility.bioinformatics.irida.model.workflow.submission.AnalysisSubmissionTemplate

All Implemented Interfaces:

IridaThing, MutableIridaThing, Timestamped<java.lang.Long>, java.lang.Comparable<AnalysisSubmissionTemplate>

@Entity
public class AnalysisSubmissionTemplate
extends AbstractAnalysisSubmission
implements java.lang.Comparable<AnalysisSubmissionTemplate>

Shell for an analysis template to be submitted automatically when data is uploaded to a project.

Field Summary

Fields inherited from class ca.corefacility.bioinformatics.irida.model.workflow.submission.AbstractAnalysisSubmission

analysisDescription, createdDate, emailPipelineResultCompleted, emailPipelineResultError, id, inputParameters, modifiedDate, name, namedParameters, referenceFile, submitter, updateSamples, workflowId

Constructor Summary

Constructors

Modifier	Constructor	Description
protected	AnalysisSubmissionTemplate()
	AnalysisSubmissionTemplate(java.lang.String name, java.util.UUID workflowId, IridaWorkflowNamedParameters namedParameters, ReferenceFile referenceFile, boolean updateSamples, java.lang.String analysisDescription, boolean emailPipelineResultCompleted, boolean emailPipelineResultError, Project submittedProject)
	AnalysisSubmissionTemplate(java.lang.String name, java.util.UUID workflowId, java.util.Map<java.lang.String,java.lang.String> inputParameters, ReferenceFile referenceFile, boolean updateSamples, java.lang.String analysisDescription, boolean emailPipelineResultCompleted, boolean emailPipelineResultError, Project submittedProject)

Method Summary

Modifier and Type	Method	Description
int	compareTo(AnalysisSubmissionTemplate o)
boolean	equals(java.lang.Object other)
java.lang.String	getStatusMessage()
Project	getSubmittedProject()
int	hashCode()
boolean	isEnabled()
void	setEnabled(boolean enabled)
void	setReferenceFile(ReferenceFile referenceFile)	Sets the reference file.
void	setStatusMessage(java.lang.String statusMessage)

Methods inherited from class ca.corefacility.bioinformatics.irida.model.workflow.submission.AbstractAnalysisSubmission

getAnalysisDescription, getCreatedDate, getEmailPipelineResultCompleted, getEmailPipelineResultError, getId, getInputParameters, getLabel, getModifiedDate, getName, getNamedParameters, getReferenceFile, getSubmitter, getUpdateSamples, getWorkflowId, setAnalysisDescription, setEmailPipelineResultCompleted, setEmailPipelineResultError, setId, setModifiedDate, setName, setSubmitter, setUpdateSamples, setWorkflowId, toString

Methods inherited from class ca.corefacility.bioinformatics.irida.model.IridaRepresentationModel

add, add, getLink, getLinks, getRemoteStatus, getSelfHref, hasLink, hasLinks, removeLinks, setRemoteStatus

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface ca.corefacility.bioinformatics.irida.model.IridaThing

getIdentifier, setLabel

Constructor Detail

AnalysisSubmissionTemplate

protected AnalysisSubmissionTemplate()

AnalysisSubmissionTemplate

public AnalysisSubmissionTemplate(java.lang.String name,
                                  java.util.UUID workflowId,
                                  IridaWorkflowNamedParameters namedParameters,
                                  ReferenceFile referenceFile,
                                  boolean updateSamples,
                                  java.lang.String analysisDescription,
                                  boolean emailPipelineResultCompleted,
                                  boolean emailPipelineResultError,
                                  Project submittedProject)

AnalysisSubmissionTemplate

public AnalysisSubmissionTemplate(java.lang.String name,
                                  java.util.UUID workflowId,
                                  java.util.Map<java.lang.String,java.lang.String> inputParameters,
                                  ReferenceFile referenceFile,
                                  boolean updateSamples,
                                  java.lang.String analysisDescription,
                                  boolean emailPipelineResultCompleted,
                                  boolean emailPipelineResultError,
                                  Project submittedProject)

Method Detail

setReferenceFile

public void setReferenceFile(ReferenceFile referenceFile)

Sets the reference file.

Overrides:

setReferenceFile in class AbstractAnalysisSubmission

Parameters:

referenceFile - The reference file.

getSubmittedProject

public Project getSubmittedProject()

hashCode

public int hashCode()

Description copied from class: IridaRepresentationModel

Overrides:

hashCode in class AbstractAnalysisSubmission

equals

public boolean equals(java.lang.Object other)

Description copied from class: IridaRepresentationModel

Overrides:

equals in class AbstractAnalysisSubmission

compareTo

public int compareTo(AnalysisSubmissionTemplate o)

Specified by:

compareTo in interface java.lang.Comparable<AnalysisSubmissionTemplate>

isEnabled

public boolean isEnabled()

setEnabled

public void setEnabled(boolean enabled)

setStatusMessage

public void setStatusMessage(java.lang.String statusMessage)

getStatusMessage

public java.lang.String getStatusMessage()