Package ca.corefacility.bioinformatics.irida.pipeline.results.updater.impl

Class AssemblySampleUpdater

java.lang.Object

ca.corefacility.bioinformatics.irida.pipeline.results.updater.impl.AssemblySampleUpdater

All Implemented Interfaces:

AnalysisSampleUpdater

@Component
public class AssemblySampleUpdater
extends java.lang.Object
implements AnalysisSampleUpdater

Updates a sample with the results from a genome assembly.

Constructor Summary

Constructors

Constructor	Description
AssemblySampleUpdater(SampleGenomeAssemblyJoinRepository sampleGenomeAssemblyJoinRepository)

Method Summary

Modifier and Type	Method	Description
AnalysisType	getAnalysisType()	Gets the AnalysisType this updater service handles.
void	update(java.util.Collection<Sample> samples, AnalysisSubmission analysis)	Updates a collection of samples with a particular analysis result.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AssemblySampleUpdater

@Autowired
public AssemblySampleUpdater(SampleGenomeAssemblyJoinRepository sampleGenomeAssemblyJoinRepository)

Method Detail

update

public void update(java.util.Collection<Sample> samples,
                   AnalysisSubmission analysis)

Updates a collection of samples with a particular analysis result.

Specified by:

update in interface AnalysisSampleUpdater

Parameters:

samples - The samples to update.

analysis - The AnalysisSubmission to use for updating.

getAnalysisType

public AnalysisType getAnalysisType()

Gets the AnalysisType this updater service handles.

Specified by:

getAnalysisType in interface AnalysisSampleUpdater

Returns:

The AnalysisType.