Package ca.corefacility.bioinformatics.irida.pipeline.results.updater.impl

Class BioHanselSampleUpdater

java.lang.Object

ca.corefacility.bioinformatics.irida.pipeline.results.updater.impl.BioHanselSampleUpdater

All Implemented Interfaces:

AnalysisSampleUpdater

@Component
public class BioHanselSampleUpdater
extends java.lang.Object
implements AnalysisSampleUpdater

AnalysisSampleUpdater for bio_hansel results to be written to metadata of Samples.

Constructor Summary

Constructors

Constructor	Description
BioHanselSampleUpdater(MetadataTemplateService metadataTemplateService, SampleService sampleService)

Method Summary

Modifier and Type	Method	Description
AnalysisType	getAnalysisType()	Gets the AnalysisType this updater service handles.
void	update(java.util.Collection<Sample> samples, AnalysisSubmission analysis)	Add bio_hansel results to the metadata of the given Sample.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BioHanselSampleUpdater

@Autowired
public BioHanselSampleUpdater(MetadataTemplateService metadataTemplateService,
                              SampleService sampleService)

Method Detail

update

public void update(java.util.Collection<Sample> samples,
                   AnalysisSubmission analysis)
            throws PostProcessingException

Add bio_hansel results to the metadata of the given Sample.

Create a bio_hansel MetadataTemplate for each Project of the Sample if one doesn't exist.

Specified by:

update in interface AnalysisSampleUpdater

Parameters:

samples - The sample to update (collection should only have one Sample object).

analysis - Use the results from this AnalysisSubmission to update the Sample metadata.

Throws:

PostProcessingException - if the updater could not complete its processing

getAnalysisType

public AnalysisType getAnalysisType()

Gets the AnalysisType this updater service handles.

Specified by:

getAnalysisType in interface AnalysisSampleUpdater

Returns:

The AnalysisType.