Package ca.corefacility.bioinformatics.irida.pipeline.upload.galaxy

Class GalaxyJobErrorsService

java.lang.Object

ca.corefacility.bioinformatics.irida.pipeline.upload.galaxy.GalaxyJobErrorsService

public class GalaxyJobErrorsService
extends java.lang.Object

Class to create new JobError objects using a Galaxy HistoriesClient, ToolsClient and JobsClient if an error occurred during an Galaxy pipeline AnalysisSubmission.

Constructor Summary

Constructors

Constructor	Description
GalaxyJobErrorsService(com.github.jmchilton.blend4j.galaxy.HistoriesClient historiesClient, com.github.jmchilton.blend4j.galaxy.ToolsClient toolsClient, com.github.jmchilton.blend4j.galaxy.JobsClient jobsClient)

Method Summary

Modifier and Type	Method	Description
java.util.List<JobError>	createNewJobErrors(AnalysisSubmission analysisSubmission)	Get any JobError associated with an AnalysisSubmission

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GalaxyJobErrorsService

public GalaxyJobErrorsService(com.github.jmchilton.blend4j.galaxy.HistoriesClient historiesClient,
                              com.github.jmchilton.blend4j.galaxy.ToolsClient toolsClient,
                              com.github.jmchilton.blend4j.galaxy.JobsClient jobsClient)

Method Detail

createNewJobErrors

public java.util.List<JobError> createNewJobErrors(AnalysisSubmission analysisSubmission)

Get any JobError associated with an AnalysisSubmission

Parameters:

analysisSubmission - AnalysisSubmission to search for job failures

Returns:

List of JobError objects associated with AnalysisSubmission