Package ca.corefacility.bioinformatics.irida.repositories.analysis.submission

Class AnalysisSubmissionRepositoryImpl

java.lang.Object

ca.corefacility.bioinformatics.irida.repositories.analysis.submission.AnalysisSubmissionRepositoryImpl

All Implemented Interfaces:

AnalysisSubmissionRepositoryCustom

@Repository
public class AnalysisSubmissionRepositoryImpl
extends java.lang.Object
implements AnalysisSubmissionRepositoryCustom

Implementation of AnalysisSubmissionRepositoryCustom with methods using native SQL queries to get AnalysisOutputFile info for Project and User

Constructor Summary

Constructors

Constructor	Description
AnalysisSubmissionRepositoryImpl(javax.sql.DataSource dataSource, java.nio.file.Path outputFileBaseDirectory)

Method Summary

Modifier and Type	Method	Description
java.util.List<ProjectSampleAnalysisOutputInfo>	getAllAnalysisOutputInfoSharedWithProject(java.lang.Long projectId, java.util.Set<java.util.UUID> workflowIds)	Get all ProjectSampleAnalysisOutputInfo shared with a Project.
java.util.List<ProjectSampleAnalysisOutputInfo>	getAllAutomatedAnalysisOutputInfoForAProject(java.lang.Long projectId, java.util.Set<java.util.UUID> workflowIds)	Get all automated ProjectSampleAnalysisOutputInfo for a Project.
java.util.List<ProjectSampleAnalysisOutputInfo>	getAllUserAnalysisOutputInfo(java.lang.Long userId)	Get all User generated analysis output information.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AnalysisSubmissionRepositoryImpl

@Autowired
public AnalysisSubmissionRepositoryImpl(javax.sql.DataSource dataSource,
                                        @Qualifier("outputFileBaseDirectory")
                                        java.nio.file.Path outputFileBaseDirectory)

Method Detail

getAllAnalysisOutputInfoSharedWithProject

public java.util.List<ProjectSampleAnalysisOutputInfo> getAllAnalysisOutputInfoSharedWithProject(java.lang.Long projectId,
                                                                                                 java.util.Set<java.util.UUID> workflowIds)

Get all ProjectSampleAnalysisOutputInfo shared with a Project.

Specified by:

getAllAnalysisOutputInfoSharedWithProject in interface AnalysisSubmissionRepositoryCustom

Parameters:

projectId - Project id

workflowIds - Workflow UUIDs of workflow pipelines to get output files for

Returns:

a list of ProjectSampleAnalysisOutputInfo

getAllAutomatedAnalysisOutputInfoForAProject

public java.util.List<ProjectSampleAnalysisOutputInfo> getAllAutomatedAnalysisOutputInfoForAProject(java.lang.Long projectId,
                                                                                                    java.util.Set<java.util.UUID> workflowIds)

Get all automated ProjectSampleAnalysisOutputInfo for a Project.

Specified by:

getAllAutomatedAnalysisOutputInfoForAProject in interface AnalysisSubmissionRepositoryCustom

Parameters:

projectId - Project id

workflowIds - Workflow UUIDs of workflow pipelines to get output files for

Returns:

a list of ProjectSampleAnalysisOutputInfo

getAllUserAnalysisOutputInfo

public java.util.List<ProjectSampleAnalysisOutputInfo> getAllUserAnalysisOutputInfo(java.lang.Long userId)

Get all User generated analysis output information.

Specified by:

getAllUserAnalysisOutputInfo in interface AnalysisSubmissionRepositoryCustom

Parameters:

userId - User id

Returns:

a list of ProjectSampleAnalysisOutputInfo