Package ca.corefacility.bioinformatics.irida.repositories.referencefile

Class ReferenceFileRepositoryImpl

java.lang.Object

ca.corefacility.bioinformatics.irida.repositories.filesystem.FilesystemSupplementedRepositoryImpl<ReferenceFile>

ca.corefacility.bioinformatics.irida.repositories.referencefile.ReferenceFileRepositoryImpl

All Implemented Interfaces:

FilesystemSupplementedRepository<ReferenceFile>

@Repository
public class ReferenceFileRepositoryImpl
extends FilesystemSupplementedRepositoryImpl<ReferenceFile>

Custom implementation of FilesystemSupplementedRepositoryImpl for ReferenceFile.

Nested Class Summary

Nested classes/interfaces inherited from class ca.corefacility.bioinformatics.irida.repositories.filesystem.FilesystemSupplementedRepositoryImpl

FilesystemSupplementedRepositoryImpl.RelativePathTranslatorListener

Constructor Summary

Constructors

Constructor	Description
ReferenceFileRepositoryImpl(javax.persistence.EntityManager entityManager, SequenceFileUtilities sequenceFileUtilities, java.nio.file.Path baseDirectory)

Method Summary

Modifier and Type	Method	Description
ReferenceFile	save(ReferenceFile entity)	Persist an entity to disk and database.

Methods inherited from class ca.corefacility.bioinformatics.irida.repositories.filesystem.FilesystemSupplementedRepositoryImpl

saveInternal, saveMetadata

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ReferenceFileRepositoryImpl

@Autowired
public ReferenceFileRepositoryImpl(javax.persistence.EntityManager entityManager,
                                   SequenceFileUtilities sequenceFileUtilities,
                                   @Qualifier("referenceFileBaseDirectory")
                                   java.nio.file.Path baseDirectory)

Method Detail

save

public ReferenceFile save(ReferenceFile entity)

Persist an entity to disk and database. Implementors of this method are recommended to call FilesystemSupplementedRepositoryImpl.saveInternal(Type) to avoid repeated boilerplate code.

Specified by:

save in class FilesystemSupplementedRepositoryImpl<ReferenceFile>

Parameters:

entity - the entity to persist.

Returns:

the persisted entity.