Package ca.corefacility.bioinformatics.irida.repositories.remote

Interface SequenceFileRemoteRepository

All Superinterfaces:

RemoteRepository<SequenceFile>

All Known Implementing Classes:

SequenceFileRemoteRepositoryImpl

public interface SequenceFileRemoteRepository
extends RemoteRepository<SequenceFile>

Repository for reading SequenceFiles from a Remote IRIDA installation

Method Summary

Modifier and Type	Method	Description
java.nio.file.Path	downloadRemoteSequenceFile(java.lang.String uri, RemoteAPI api)	Get a local copy of a SequenceFile with a default MediaType of application/fastq
java.nio.file.Path	downloadRemoteSequenceFile(java.lang.String uri, RemoteAPI api, org.springframework.http.MediaType... mediaTypes)	Get a local copy of a SequenceFile

Methods inherited from interface ca.corefacility.bioinformatics.irida.repositories.remote.RemoteRepository

getServiceStatus, list, read

Method Detail

downloadRemoteSequenceFile

java.nio.file.Path downloadRemoteSequenceFile(java.lang.String uri,
                                              RemoteAPI api)

Get a local copy of a SequenceFile with a default MediaType of application/fastq

Parameters:

uri - The URI to get sequence data for

api - The RemoteAPI this file resides on

Returns:

A temporary Path to the sequence file data

downloadRemoteSequenceFile

java.nio.file.Path downloadRemoteSequenceFile(java.lang.String uri,
                                              RemoteAPI api,
                                              org.springframework.http.MediaType... mediaTypes)

Get a local copy of a SequenceFile

Parameters:

uri - the URI of the file to download

api - The RemoteAPI this file resides on

mediaTypes - The media types to request from the remote API

Returns:

A temporary Path to the sequence file data