Package ca.corefacility.bioinformatics.irida.service.impl.export

Class NcbiExportSubmissionServiceImpl

java.lang.Object

ca.corefacility.bioinformatics.irida.service.impl.CRUDServiceImpl<java.lang.Long,NcbiExportSubmission>

ca.corefacility.bioinformatics.irida.service.impl.export.NcbiExportSubmissionServiceImpl

All Implemented Interfaces:

CRUDService<java.lang.Long,NcbiExportSubmission>, NcbiExportSubmissionService

@Service
public class NcbiExportSubmissionServiceImpl
extends CRUDServiceImpl<java.lang.Long,NcbiExportSubmission>
implements NcbiExportSubmissionService

Service impl for submitting data to NCBI

Field Summary

Fields inherited from class ca.corefacility.bioinformatics.irida.service.impl.CRUDServiceImpl

CREATED_DATE_SORT_PROPERTY, validator, valueType

Constructor Summary

Constructors

Constructor	Description
NcbiExportSubmissionServiceImpl(NcbiExportSubmissionRepository repository, javax.validation.Validator validator)

Method Summary

Modifier and Type	Method	Description
NcbiExportSubmission	create(NcbiExportSubmission object)	Create a new object in the persistence store.
java.util.List<NcbiExportSubmission>	getSubmissionsForProject(Project project)	Get a List of NcbiExportSubmission for the given Project
java.util.List<NcbiExportSubmission>	getSubmissionsWithState(ExportUploadState state)	Get a List of NcbiExportSubmission object with the given ExportUploadState
java.util.List<NcbiExportSubmission>	getSubmissionsWithState(java.util.Set<ExportUploadState> states)	Get a List of NcbiExportSubmission objects which have one of the given ExportUploadStates
org.springframework.data.domain.Page<NcbiExportSubmission>	list(int page, int size, org.springframework.data.domain.Sort sort)	List objects of Type in the database, limited to some specific page
org.springframework.data.domain.Page<NcbiExportSubmission>	list(int page, int size, org.springframework.data.domain.Sort.Direction order, java.lang.String... sortProperties)	List objects of Type in the database, limited to some specific page.
NcbiExportSubmission	read(java.lang.Long id)	Read the object type by unique identifier.
NcbiExportSubmission	update(NcbiExportSubmission object)	Update an object

Methods inherited from class ca.corefacility.bioinformatics.irida.service.impl.CRUDServiceImpl

count, delete, exists, findAll, findRevisions, findRevisions, list, readMultiple, search, search, updateFields, updateMultiple

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ca.corefacility.bioinformatics.irida.service.CRUDService

count, delete, exists, findAll, findRevisions, findRevisions, list, readMultiple, search, search, updateFields, updateMultiple

Constructor Detail

NcbiExportSubmissionServiceImpl

@Autowired
public NcbiExportSubmissionServiceImpl(NcbiExportSubmissionRepository repository,
                                       javax.validation.Validator validator)

Method Detail

read

@PreAuthorize("hasPermission(#id, \'canReadExportSubmission\')")
public NcbiExportSubmission read(java.lang.Long id)
                          throws EntityNotFoundException

Read the object type by unique identifier.

Specified by:

read in interface CRUDService<java.lang.Long,NcbiExportSubmission>

Overrides:

read in class CRUDServiceImpl<java.lang.Long,NcbiExportSubmission>

Parameters:

id - The unique identifier for this object.

Returns:

The object corresponding to the unique identifier.

Throws:

EntityNotFoundException - If the identifier does not exist in the database.

create

@PreAuthorize("isAuthenticated()")
public NcbiExportSubmission create(NcbiExportSubmission object)
                            throws javax.validation.ConstraintViolationException,
                                   EntityExistsException

Create a new object in the persistence store.

Specified by:

create in interface CRUDService<java.lang.Long,NcbiExportSubmission>

Overrides:

create in class CRUDServiceImpl<java.lang.Long,NcbiExportSubmission>

Parameters:

object - The object to persist.

Returns:

The object as it was persisted in the database. May modify the identifier of the object when returned.

Throws:

javax.validation.ConstraintViolationException - If the object being persisted cannot be validated by validation rules associated with the object.

EntityExistsException - If the object being persisted violates uniqueness constraints in the database.

getSubmissionsWithState

@PreAuthorize("hasRole(\'ROLE_ADMIN\')")
public java.util.List<NcbiExportSubmission> getSubmissionsWithState(ExportUploadState state)

Get a List of NcbiExportSubmission object with the given ExportUploadState

Specified by:

getSubmissionsWithState in interface NcbiExportSubmissionService

Parameters:

state - ExportUploadState to search for

Returns:

a List of NcbiExportSubmission

getSubmissionsWithState

@PreAuthorize("hasRole(\'ROLE_ADMIN\')")
public java.util.List<NcbiExportSubmission> getSubmissionsWithState(java.util.Set<ExportUploadState> states)

Get a List of NcbiExportSubmission objects which have one of the given ExportUploadStates

Specified by:

getSubmissionsWithState in interface NcbiExportSubmissionService

Parameters:

states - collection of ExportUploadState to search for

Returns:

a List of NcbiExportSubmission

getSubmissionsForProject

@PreAuthorize("hasPermission(#project, \'canReadProject\')")
@PostFilter("hasPermission(filterObject, \'canReadExportSubmission\')")
public java.util.List<NcbiExportSubmission> getSubmissionsForProject(Project project)

Get a List of NcbiExportSubmission for the given Project

Specified by:

getSubmissionsForProject in interface NcbiExportSubmissionService

Parameters:

project - The Project for the submission

Returns:

a List of NcbiExportSubmission

list

@PreAuthorize("hasRole(\'ROLE_ADMIN\')")
public org.springframework.data.domain.Page<NcbiExportSubmission> list(int page,
                                                                       int size,
                                                                       org.springframework.data.domain.Sort.Direction order,
                                                                       java.lang.String... sortProperties)
                                                                throws java.lang.IllegalArgumentException

List objects of Type in the database, limited to some specific page.

Specified by:

list in interface CRUDService<java.lang.Long,NcbiExportSubmission>

Overrides:

list in class CRUDServiceImpl<java.lang.Long,NcbiExportSubmission>

Parameters:

page - the specific page to use.

size - the size of the pages used to compute the number of pages.

order - the order of the sort.

sortProperties - the properties used to sort the collection.

Returns:

the list of users within the specified range.

Throws:

java.lang.IllegalArgumentException - If the Type has no public property sortProperty.

list

@PreAuthorize("hasRole(\'ROLE_ADMIN\')")
public org.springframework.data.domain.Page<NcbiExportSubmission> list(int page,
                                                                       int size,
                                                                       org.springframework.data.domain.Sort sort)
                                                                throws java.lang.IllegalArgumentException

List objects of Type in the database, limited to some specific page

Specified by:

list in interface CRUDService<java.lang.Long,NcbiExportSubmission>

Overrides:

list in class CRUDServiceImpl<java.lang.Long,NcbiExportSubmission>

Parameters:

page - the specific page to use

size - the size of the pages

sort - A Sort object for ordering the results

Returns:

a list of objects in the given range

Throws:

java.lang.IllegalArgumentException

update

@PreAuthorize("hasRole(\'ROLE_ADMIN\')")
public NcbiExportSubmission update(NcbiExportSubmission object)

Update an object

Specified by:

update in interface CRUDService<java.lang.Long,NcbiExportSubmission>

Overrides:

update in class CRUDServiceImpl<java.lang.Long,NcbiExportSubmission>

Parameters:

object - The object to update

Returns:

The updated object