Package ca.corefacility.bioinformatics.irida.service.remote

Interface GenomeAssemblyRemoteService

All Superinterfaces:

RemoteService<UploadedAssembly>

All Known Implementing Classes:

GenomeAssemblyRemoteServiceImpl

public interface GenomeAssemblyRemoteService
extends RemoteService<UploadedAssembly>

A service for reading UploadedAssemblys from a remote location

Method Summary

Modifier and Type	Method	Description
java.util.List<UploadedAssembly>	getGenomeAssembliesForSample(Sample sample)	List the GenomeAssembly for a given Sample
UploadedAssembly	mirrorAssembly(UploadedAssembly seqObject)	Download the given UploadedAssembly to the local server

Methods inherited from interface ca.corefacility.bioinformatics.irida.service.remote.RemoteService

getServiceStatus, list, read, read

Method Detail

getGenomeAssembliesForSample

java.util.List<UploadedAssembly> getGenomeAssembliesForSample(Sample sample)
                                                       throws LinkNotFoundException

List the GenomeAssembly for a given Sample

Parameters:

sample - the Sample to get assemblies for

Returns:

a list of UploadedAssembly

Throws:

LinkNotFoundException - if the targeted API does not support assemblies

mirrorAssembly

UploadedAssembly mirrorAssembly(UploadedAssembly seqObject)

Download the given UploadedAssembly to the local server

Parameters:

seqObject - the UploadedAssembly to download

Returns:

a local copy of the UploadedAssembly