Package ca.corefacility.bioinformatics.irida.config.analysis

Class ExecutionManagerConfig

java.lang.Object

ca.corefacility.bioinformatics.irida.config.analysis.ExecutionManagerConfig

@Configuration
@Profile({"dev","prod","it","analysis","ncbi","processing","sync","email","web"})
public class ExecutionManagerConfig
extends java.lang.Object

Configuration for connections to an ExecutionManager in IRIDA.

Constructor Summary

Constructors

Constructor	Description
ExecutionManagerConfig()

Method Summary

Modifier and Type	Method	Description
ExecutionManagerGalaxy	executionManager()	Builds a new ExecutionManagerGalaxy from the given properties.
GalaxyHistoriesService	galaxyHistoriesService()
com.github.jmchilton.blend4j.galaxy.GalaxyInstance	galaxyInstance()
GalaxyJobErrorsService	galaxyJobErrorsService()
GalaxyLibrariesService	galaxyLibrariesService()
GalaxyToolDataService	galaxyToolDataService()
GalaxyWorkflowService	galaxyWorkflowService()
com.github.jmchilton.blend4j.galaxy.HistoriesClient	historiesClient()
com.github.jmchilton.blend4j.galaxy.JobsClient	jobsClient()
com.github.jmchilton.blend4j.galaxy.LibrariesClient	librariesClient()
com.github.jmchilton.blend4j.galaxy.RolesClient	rolesClient()
com.github.jmchilton.blend4j.galaxy.ToolDataClient	toolDataClient()
com.github.jmchilton.blend4j.galaxy.ToolsClient	toolsClient()
com.github.jmchilton.blend4j.galaxy.WorkflowsClient	workflowsClient()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ExecutionManagerConfig

public ExecutionManagerConfig()

Method Detail

executionManager

@Lazy
@Bean
public ExecutionManagerGalaxy executionManager()
                                        throws ExecutionManagerConfigurationException

Builds a new ExecutionManagerGalaxy from the given properties.

Returns:

An ExecutionManagerGalaxy.

Throws:

ExecutionManagerConfigurationException - If no execution manager is configured.

galaxyWorkflowService

@Lazy
@Bean
public GalaxyWorkflowService galaxyWorkflowService()
                                            throws ExecutionManagerConfigurationException

Returns:

A GalaxyWorkflowService for interacting with Galaxy workflows.

Throws:

ExecutionManagerConfigurationException - If there is an issue building the execution manager.

galaxyToolDataService

@Lazy
@Bean
public GalaxyToolDataService galaxyToolDataService()
                                            throws ExecutionManagerConfigurationException

Returns:

A GalaxyToolDataService for interacting with Galaxy Tool Data Tables.

Throws:

ExecutionManagerConfigurationException - If there is an issue building the execution manager.

toolDataClient

@Lazy
@Bean
public com.github.jmchilton.blend4j.galaxy.ToolDataClient toolDataClient()
                                                                  throws ExecutionManagerConfigurationException

Returns:

A ToolDataClient for interacting with Galaxy.

Throws:

ExecutionManagerConfigurationException - If there is an issue building the execution manager.

rolesClient

@Lazy
@Bean
public com.github.jmchilton.blend4j.galaxy.RolesClient rolesClient()
                                                            throws ExecutionManagerConfigurationException

Returns:

A RolesClient for dealing with roles in Galaxy.

Throws:

ExecutionManagerConfigurationException - If there is an issue building the execution manager.

workflowsClient

@Lazy
@Bean
public com.github.jmchilton.blend4j.galaxy.WorkflowsClient workflowsClient()
                                                                    throws ExecutionManagerConfigurationException

Returns:

A WorkflowsClient for interacting with Galaxy.

Throws:

ExecutionManagerConfigurationException - If there is an issue building the execution manager.

librariesClient

@Lazy
@Bean
public com.github.jmchilton.blend4j.galaxy.LibrariesClient librariesClient()
                                                                    throws ExecutionManagerConfigurationException

Returns:

A LibrariesClient for interacting with Galaxy.

Throws:

ExecutionManagerConfigurationException - If there is an issue building the execution manager.

galaxyHistoriesService

@Lazy
@Bean
public GalaxyHistoriesService galaxyHistoriesService()
                                              throws ExecutionManagerConfigurationException

Returns:

A GalaxyHistoriesService for interacting with Galaxy histories.

Throws:

ExecutionManagerConfigurationException - If there is an issue building the execution manager.

galaxyLibrariesService

@Lazy
@Bean
public GalaxyLibrariesService galaxyLibrariesService()
                                              throws ExecutionManagerConfigurationException

Returns:

A GalaxyHistoriesService for interacting with Galaxy histories.

Throws:

ExecutionManagerConfigurationException - If there is an issue building the execution manager.

toolsClient

@Lazy
@Bean
public com.github.jmchilton.blend4j.galaxy.ToolsClient toolsClient()
                                                            throws ExecutionManagerConfigurationException

Returns:

A ToolsClient for interacting with Galaxy tools.

Throws:

ExecutionManagerConfigurationException - If there is an issue building the execution manager.

jobsClient

@Lazy
@Bean
public com.github.jmchilton.blend4j.galaxy.JobsClient jobsClient()
                                                          throws ExecutionManagerConfigurationException

Returns:

A JobsClient for interacting with Galaxy jobs.

Throws:

ExecutionManagerConfigurationException - If there is an issue building the execution manager.

historiesClient

@Lazy
@Bean
public com.github.jmchilton.blend4j.galaxy.HistoriesClient historiesClient()
                                                                    throws ExecutionManagerConfigurationException

Returns:

A HistoriesClient for interacting with Galaxy histories.

Throws:

ExecutionManagerConfigurationException - If there is an issue building the execution manager.

galaxyJobErrorsService

@Lazy
@Bean
public GalaxyJobErrorsService galaxyJobErrorsService()
                                              throws ExecutionManagerConfigurationException

Throws:

ExecutionManagerConfigurationException

galaxyInstance

@Lazy
@Bean
public com.github.jmchilton.blend4j.galaxy.GalaxyInstance galaxyInstance()
                                                                  throws ExecutionManagerConfigurationException

Returns:

An instance of a connection to Galaxy.

Throws:

ExecutionManagerConfigurationException - If there is an issue building the execution manager.