Package ca.corefacility.bioinformatics.irida.service.impl

Class AnalysisServiceImpl

java.lang.Object

ca.corefacility.bioinformatics.irida.service.impl.CRUDServiceImpl<java.lang.Long,Analysis>

ca.corefacility.bioinformatics.irida.service.impl.AnalysisServiceImpl

All Implemented Interfaces:

AnalysisService, CRUDService<java.lang.Long,Analysis>

@Service
public class AnalysisServiceImpl
extends CRUDServiceImpl<java.lang.Long,Analysis>
implements AnalysisService

Implementation of AnalysisService.

Field Summary

Fields inherited from class ca.corefacility.bioinformatics.irida.service.impl.CRUDServiceImpl

CREATED_DATE_SORT_PROPERTY, repository, validator, valueType

Constructor Summary

Constructors

Constructor	Description
AnalysisServiceImpl(AnalysisRepository analysisRepository, AnalysisOutputFileRepository analysisOutputFileRepository, javax.validation.Validator validator)

Method Summary

Modifier and Type	Method	Description
Analysis	create(Analysis analysis)	Create a new object in the persistence store.
AnalysisFastQC	getFastQCAnalysisForSequenceFile(SequencingObject object, java.lang.Long fileId)	Get the AnalysisFastQC object for a given SequencingObject and SequenceFile ID
Analysis	read(java.lang.Long analysisId)	Read the object type by unique identifier.

Methods inherited from class ca.corefacility.bioinformatics.irida.service.impl.CRUDServiceImpl

count, delete, exists, findAll, findRevisions, findRevisions, list, list, list, readMultiple, search, search, update, updateFields, updateMultiple

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ca.corefacility.bioinformatics.irida.service.CRUDService

count, delete, exists, findAll, findRevisions, findRevisions, list, list, list, readMultiple, search, search, update, updateFields, updateMultiple

Constructor Detail

AnalysisServiceImpl

@Autowired
public AnalysisServiceImpl(AnalysisRepository analysisRepository,
                           AnalysisOutputFileRepository analysisOutputFileRepository,
                           javax.validation.Validator validator)

Method Detail

read

@PreAuthorize("hasRole(\'ROLE_ADMIN\') or hasPermission(#analysisId, \'canReadAnalysis\')")
public Analysis read(java.lang.Long analysisId)

Read the object type by unique identifier.

Specified by:

read in interface CRUDService<java.lang.Long,Analysis>

Overrides:

read in class CRUDServiceImpl<java.lang.Long,Analysis>

Parameters:

analysisId - The unique identifier for this object.

Returns:

The object corresponding to the unique identifier.

create

@PreAuthorize("hasRole(\'ROLE_USER\')")
public Analysis create(Analysis analysis)

Create a new object in the persistence store.

Specified by:

create in interface CRUDService<java.lang.Long,Analysis>

Overrides:

create in class CRUDServiceImpl<java.lang.Long,Analysis>

Parameters:

analysis - The object to persist.

Returns:

The object as it was persisted in the database. May modify the identifier of the object when returned.

getFastQCAnalysisForSequenceFile

@PreAuthorize("hasAnyRole(\'ROLE_ADMIN\', \'ROLE_TECHNICIAN\') or hasPermission(#object, \'canReadSequencingObject\')")
public AnalysisFastQC getFastQCAnalysisForSequenceFile(SequencingObject object,
                                                       java.lang.Long fileId)

Get the AnalysisFastQC object for a given SequencingObject and SequenceFile ID

Specified by:

getFastQCAnalysisForSequenceFile in interface AnalysisService

Parameters:

object - the SequencingObject

fileId - the SequenceFile id within the SequencingObject

Returns:

the AnalysisFastQC for the given SequenceFile