Package ca.corefacility.bioinformatics.irida.service.remote.impl

Class SingleEndSequenceFileRemoteServiceImpl

java.lang.Object

ca.corefacility.bioinformatics.irida.service.remote.impl.RemoteServiceImpl<Type>

ca.corefacility.bioinformatics.irida.service.remote.impl.SequencingObjectRemoteServiceImpl<SingleEndSequenceFile>

ca.corefacility.bioinformatics.irida.service.remote.impl.SingleEndSequenceFileRemoteServiceImpl

All Implemented Interfaces:

RemoteService<SingleEndSequenceFile>, SequencingObjectRemoteService<SingleEndSequenceFile>, SingleEndSequenceFileRemoteService

@Service
public class SingleEndSequenceFileRemoteServiceImpl
extends SequencingObjectRemoteServiceImpl<SingleEndSequenceFile>
implements SingleEndSequenceFileRemoteService

Implementation of SingleEndSequenceFileRemoteService using a SingleEndSequenceFileRemoteRepository

Field Summary

Fields

Modifier and Type	Field	Description
static java.lang.String	SAMPLE_SEQENCE_FILE_UNPAIRED_REL

Fields inherited from class ca.corefacility.bioinformatics.irida.service.remote.impl.SequencingObjectRemoteServiceImpl

sequenceFileRemoteRepository

Constructor Summary

Constructors

Constructor	Description
SingleEndSequenceFileRemoteServiceImpl(SingleEndSequenceFileRemoteRepository repository, SequenceFileRemoteRepository fileRemoteRepository, RemoteAPIRepository remoteAPIRepository)

Method Summary

Modifier and Type	Method	Description
java.util.List<SingleEndSequenceFile>	getUnpairedFilesForSample(Sample sample)	Get all the SingleEndSequenceFiles associated with a Sample

Methods inherited from class ca.corefacility.bioinformatics.irida.service.remote.impl.SequencingObjectRemoteServiceImpl

mirrorSequencingObject

Methods inherited from class ca.corefacility.bioinformatics.irida.service.remote.impl.RemoteServiceImpl

getRemoteApiForURI, getServiceStatus, list, read, read

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ca.corefacility.bioinformatics.irida.service.remote.RemoteService

getServiceStatus, list, read, read

Methods inherited from interface ca.corefacility.bioinformatics.irida.service.remote.SequencingObjectRemoteService

mirrorSequencingObject

Field Detail

SAMPLE_SEQENCE_FILE_UNPAIRED_REL

public static final java.lang.String SAMPLE_SEQENCE_FILE_UNPAIRED_REL

See Also:

Constant Field Values

Constructor Detail

SingleEndSequenceFileRemoteServiceImpl

@Autowired
public SingleEndSequenceFileRemoteServiceImpl(SingleEndSequenceFileRemoteRepository repository,
                                              SequenceFileRemoteRepository fileRemoteRepository,
                                              RemoteAPIRepository remoteAPIRepository)

Method Detail

getUnpairedFilesForSample

public java.util.List<SingleEndSequenceFile> getUnpairedFilesForSample(Sample sample)

Get all the SingleEndSequenceFiles associated with a Sample

Specified by:

getUnpairedFilesForSample in interface SingleEndSequenceFileRemoteService

Parameters:

sample - Sample to get files for

Returns:

a List of SingleEndSequenceFile