Package ca.corefacility.bioinformatics.irida.service.remote.impl

Class SequencingObjectRemoteServiceImpl<Type extends SequencingObject>

java.lang.Object

ca.corefacility.bioinformatics.irida.service.remote.impl.RemoteServiceImpl<Type>

ca.corefacility.bioinformatics.irida.service.remote.impl.SequencingObjectRemoteServiceImpl<Type>

Type Parameters:

Type - The type of sequencing object for this service

All Implemented Interfaces:

RemoteService<Type>, SequencingObjectRemoteService<Type>

Direct Known Subclasses:

Fast5ObjectRemoteServiceImpl, SequenceFilePairRemoteServiceImpl, SingleEndSequenceFileRemoteServiceImpl

public class SequencingObjectRemoteServiceImpl<Type extends SequencingObject>
extends RemoteServiceImpl<Type>
implements SequencingObjectRemoteService<Type>

Service to read SequencingObjects from a remote api.

Field Summary

Fields

Modifier and Type	Field	Description
SequenceFileRemoteRepository	sequenceFileRemoteRepository

Constructor Summary

Constructors

Constructor	Description
SequencingObjectRemoteServiceImpl(RemoteRepository<Type> repository, SequenceFileRemoteRepository sequenceFileRemoteRepository, RemoteAPIRepository remoteAPIRepository)

Method Summary

Modifier and Type	Method	Description
Type	mirrorSequencingObject(Type seqObject)	Mirror a remote SequencingObject to the local system

Methods inherited from class ca.corefacility.bioinformatics.irida.service.remote.impl.RemoteServiceImpl

getRemoteApiForURI, getServiceStatus, list, read, read

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ca.corefacility.bioinformatics.irida.service.remote.RemoteService

getServiceStatus, list, read, read

Field Detail

sequenceFileRemoteRepository

public SequenceFileRemoteRepository sequenceFileRemoteRepository

Constructor Detail

SequencingObjectRemoteServiceImpl

public SequencingObjectRemoteServiceImpl(RemoteRepository<Type> repository,
                                         SequenceFileRemoteRepository sequenceFileRemoteRepository,
                                         RemoteAPIRepository remoteAPIRepository)

Method Detail

mirrorSequencingObject

public Type mirrorSequencingObject(Type seqObject)

Description copied from interface: SequencingObjectRemoteService

Mirror a remote SequencingObject to the local system

Specified by:

mirrorSequencingObject in interface SequencingObjectRemoteService<Type extends SequencingObject>

Parameters:

seqObject - a SequencingObject read from a remote source

Returns:

The locally mirrored SequencingObject