Package ca.corefacility.bioinformatics.irida.service.remote.impl

Class Fast5ObjectRemoteServiceImpl

java.lang.Object

ca.corefacility.bioinformatics.irida.service.remote.impl.RemoteServiceImpl<Type>

ca.corefacility.bioinformatics.irida.service.remote.impl.SequencingObjectRemoteServiceImpl<Fast5Object>

ca.corefacility.bioinformatics.irida.service.remote.impl.Fast5ObjectRemoteServiceImpl

All Implemented Interfaces:

Fast5ObjectRemoteService, RemoteService<Fast5Object>, SequencingObjectRemoteService<Fast5Object>

@Service
public class Fast5ObjectRemoteServiceImpl
extends SequencingObjectRemoteServiceImpl<Fast5Object>
implements Fast5ObjectRemoteService

An implementation of Fast5ObjectRemoteService using a Fast5ObjectRemoteRepository to read remote Fast5Object

Field Summary

Fields

Modifier and Type	Field	Description
static java.lang.String	REL_SAMPLE_SEQUENCE_FILE_FAST5

Fields inherited from class ca.corefacility.bioinformatics.irida.service.remote.impl.SequencingObjectRemoteServiceImpl

sequenceFileRemoteRepository

Constructor Summary

Constructors

Constructor	Description
Fast5ObjectRemoteServiceImpl(Fast5ObjectRemoteRepository repository, SequenceFileRemoteRepository fileRemoteRepository, RemoteAPIRepository remoteAPIRepository)

Method Summary

Modifier and Type	Method	Description
java.util.List<Fast5Object>	getFast5FilesForSample(Sample sample)	Get all the Fast5Objects associated with a Sample

Methods inherited from class ca.corefacility.bioinformatics.irida.service.remote.impl.SequencingObjectRemoteServiceImpl

mirrorSequencingObject

Methods inherited from class ca.corefacility.bioinformatics.irida.service.remote.impl.RemoteServiceImpl

getRemoteApiForURI, getServiceStatus, list, read, read

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ca.corefacility.bioinformatics.irida.service.remote.RemoteService

getServiceStatus, list, read, read

Methods inherited from interface ca.corefacility.bioinformatics.irida.service.remote.SequencingObjectRemoteService

mirrorSequencingObject

Field Detail

REL_SAMPLE_SEQUENCE_FILE_FAST5

public static final java.lang.String REL_SAMPLE_SEQUENCE_FILE_FAST5

See Also:

Constant Field Values

Constructor Detail

Fast5ObjectRemoteServiceImpl

@Autowired
public Fast5ObjectRemoteServiceImpl(Fast5ObjectRemoteRepository repository,
                                    SequenceFileRemoteRepository fileRemoteRepository,
                                    RemoteAPIRepository remoteAPIRepository)

Method Detail

getFast5FilesForSample

public java.util.List<Fast5Object> getFast5FilesForSample(Sample sample)

Get all the Fast5Objects associated with a Sample

Specified by:

getFast5FilesForSample in interface Fast5ObjectRemoteService

Parameters:

sample - Sample to get files for

Returns:

a List of Fast5Object